From fd142297dacc57ae0e219104b1ca0e1919c09916 Mon Sep 17 00:00:00 2001
From: efish <efish@localhost.localdomain>
Date: Thu, 22 Nov 2018 15:40:18 +0100
Subject: [PATCH] plot

---
 code/plot_spikesduringbaselineactivity.py | 25 +++++++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 code/plot_spikesduringbaselineactivity.py

diff --git a/code/plot_spikesduringbaselineactivity.py b/code/plot_spikesduringbaselineactivity.py
new file mode 100644
index 0000000..f57a4f4
--- /dev/null
+++ b/code/plot_spikesduringbaselineactivity.py
@@ -0,0 +1,25 @@
+import numpy as np
+import matplotlib.pyplot as plt
+from read_baseline_data import *
+from NixFrame import *
+from utility import *
+from IPython import embed
+
+# plot and data values
+inch_factor = 2.54
+data_dir = '../data'
+dataset = '2018-11-09-ad-invivo-1'
+
+# read spikes during baseline activity
+spikes = read_baseline_spikes(os.path.join(data_dir, dataset))
+# calculate interpike intervals and plot them
+interspikeintervals = np.diff(spikes)*1000
+
+fig, ax = plt.subplots(figsize=(12/inch_factor, 8/inch_factor))
+plt.hist(interspikeintervals, bins=np.arange(0, np.max(interspikeintervals), 0.1))
+ax.set_xlabel('time [ms]', fontsize=14)
+ax.set_ylabel('number of interspikeintervals', fontsize=14)
+ax.spines["top"].set_visible(False)
+ax.spines["right"].set_visible(False)
+fig.tight_layout()
+plt.show()
\ No newline at end of file