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fixes and new read_baseline_spikes, which does not work on broken

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Jan Grewe 2018-11-12 13:05:03 +01:00
parent 5b6f2bd967
commit e951d2df03
1 changed files with 16 additions and 5 deletions
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code/read_baseline_data.py
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@ -4,20 +4,31 @@ from IPython import embed
def read_baseline_eod(dataset): def read_baseline_eod(dataset):
base = dataset.split(os.path.sep)[-1] + ".nix" base = dataset.split(os.path.sep)[-1] + ".nix"
nix_file = nix.File.open(os.path.join(dataset, base)) nix_file = nix.File.open(os.path.join(dataset, base), nix.FileMode.ReadOnly)
b = nix_file.blocks[0] b = nix_file.blocks[0]
for t in b.tags(): t = b.tags["BaselineActivity_1"]
if "baseline" in t.name:
break;
eod_da = b.data_arrays["LocalEOD-1"] eod_da = b.data_arrays["LocalEOD-1"]
eod = t.retrieve_data("LocalEOD-1") eod = t.retrieve_data("LocalEOD-1")
time = eod_da.dimensions[0].axis(len(eod)) time = eod_da.dimensions[0].axis(len(eod))
nix_file.close() nix_file.close()
return time, eod return time, eod
def read_baseline_spikes(dataset):
base = dataset.split(os.path.sep)[-1] + ".nix"
nix_file = nix.File.open(os.path.join(dataset, base), nix.FileMode.ReadOnly)
b = nix_file.blocks[0]
t = b.tags["BaselineActivity_1"]
embed()
spike_times = t.retrieve_data("Spikes-1")
nix_file.close()
return spike_times
if __name__ == "__main__": if __name__ == "__main__":
data_dir = "../data" data_dir = "../data"
dataset = "2018-11-09-ad-invivo-1" dataset = "2018-11-09-ad-invivo-1"
time, eod = read_baseline_eod(os.path.join(data_dir, dataset)) time, eod = read_baseline_eod(os.path.join(data_dir, dataset))
spike_times = read_baseline_spikes(os.path.join(data_dir, dataset))