From 5b6f2bd9671b01af75057d23bb75102e52becbc8 Mon Sep 17 00:00:00 2001 From: Jan Grewe Date: Mon, 12 Nov 2018 11:32:50 +0100 Subject: [PATCH] add return values, remove embed --- code/read_baseline_data.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/code/read_baseline_data.py b/code/read_baseline_data.py index a0cf727..eca0157 100644 --- a/code/read_baseline_data.py +++ b/code/read_baseline_data.py @@ -5,8 +5,6 @@ from IPython import embed def read_baseline_eod(dataset): base = dataset.split(os.path.sep)[-1] + ".nix" nix_file = nix.File.open(os.path.join(dataset, base)) - embed() - nix_file.close() b = nix_file.blocks[0] for t in b.tags(): if "baseline" in t.name: @@ -15,11 +13,11 @@ def read_baseline_eod(dataset): eod = t.retrieve_data("LocalEOD-1") time = eod_da.dimensions[0].axis(len(eod)) nix_file.close() - + return time, eod if __name__ == "__main__": data_dir = "../data" dataset = "2018-11-09-ad-invivo-1" - eod = read_baseline_eod(os.path.join(data_dir, dataset)) + time, eod = read_baseline_eod(os.path.join(data_dir, dataset))