From 41f8817819319cc5c23bea71cd8e4d71f16c7bb6 Mon Sep 17 00:00:00 2001
From: efish <efish@localhost.localdomain>
Date: Thu, 22 Nov 2018 15:38:33 +0100
Subject: [PATCH] plot

---
 code/plot_eod_time_baseline.py | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100644 code/plot_eod_time_baseline.py

diff --git a/code/plot_eod_time_baseline.py b/code/plot_eod_time_baseline.py
new file mode 100644
index 0000000..7d60e3a
--- /dev/null
+++ b/code/plot_eod_time_baseline.py
@@ -0,0 +1,26 @@
+import numpy as np
+import matplotlib.pyplot as plt
+from read_baseline_data import *
+from NixFrame import *
+from utility import *
+from IPython import embed
+
+# plot and data values
+inch_factor = 2.54
+data_dir = '../data'
+dataset = '2018-11-09-ad-invivo-1'
+
+# read eod and time of baseline
+time, eod = read_baseline_eod(os.path.join(data_dir, dataset))
+
+fig, ax = plt.subplots(figsize=(12/inch_factor, 8/inch_factor))
+ax.plot(time[:1000], eod[:1000], linewidth = 2)
+ax.set_xlabel('time [ms]', fontsize=14)
+ax.set_ylabel('voltage [mV]', fontsize=14)
+plt.xticks(fontsize=12)
+plt.yticks(fontsize=12)
+ax.spines["top"].set_visible(False)
+ax.spines["right"].set_visible(False)
+fig.tight_layout()
+#plt.savefig('eod.pdf')
+plt.show()
\ No newline at end of file