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efish 2018-11-16 10:14:49 +01:00
parent 96ae72ff4f
commit 317f90f1bc
2 changed files with 74 additions and 31 deletions
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43
code/base_chirps.py Normal file
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from read_chirp_data import *
#import nix_helpers as nh
import matplotlib.pyplot as plt
import numpy as np
from IPython import embed
data_dir = "../data"
dataset = "2018-11-09-ad-invivo-1"
#data = ("2018-11-09-ad-invivo-1", "2018-11-09-ae-invivo-1", "2018-11-09-ag-invivo-1", "2018-11-13-aa-invivo-1", "2018-11-13-ac-invivo-1", "2018-11-13-ad-invivo-1", "2018-11-13-ah-invivo-1", "2018-11-13-ai-invivo-1", "2018-11-13-aj-invivo-1", "2018-11-13-ak-invivo-1", "2018-11-13-al-invivo-1", "2018-11-14-aa-invivo-1", "2018-11-14-ac-invivo-1", "2018-11-14-ad-invivo-1", "2018-11-14-af-invivo-1", "2018-11-14-ag-invivo-1", "2018-11-14-ah-invivo-1", "2018-11-14-ai-invivo-1", "2018-11-14-ak-invivo-1", "2018-11-14-al-invivo-1", "2018-11-14-am-invivo-1", "2018-11-14-an-invivo-1")
spikes = read_chirp_spikes(os.path.join(data_dir, dataset))
eod = read_chirp_eod(os.path.join(data_dir, dataset))
times = read_chirp_times(os.path.join(data_dir, dataset))
df_map = {}
for k in spikes.keys():
df = k[1]
if df in df_map.keys():
df_map[df].append(k)
else:
df_map[df] = [k]
print(df_map.keys())
e1 = eod[0, '-50Hz', '20%', '100Hz']
#plt.plot(e1[1])
#plt.show()
plt.title('EOD chirps')
plt.xlabel('Frequency')
plt.ylabel('Amplitude')
plt.plot(e1[0],e1[1])
plt.show()
ct = times[0, '-50Hz', '20%', '100Hz']
#plt.scatter(ct*1000, np.ones(len(ct)))
plt.scatter(np.asarray(ct)*1000, np.ones(len(ct)))
plt.show()
#plt.scatter(spikes[0, '-50Hz', '20%', '100Hz'][0, 0.614])
#print(len(spikes))
#print(len(eod))
#print(len(times))

62
code/liste.py
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# 9.11.18 # 9.11.18
aa: quality: poor, depth: -1341 aa: quality: poor, depth: -1341, base
ab: quality: poor, depth: -1341 ab: quality: poor, depth: -1341, base
ac: quality: good, depth: -1341 ac: quality: good, depth: -1341, base
ad: quality: good, depth: -200 ad: quality: good, depth: -200, base, chirps
ae: quality: good, depth: -200 ae: quality: good, depth: -200, chirps
af: quality: good, depth: -200 af: quality: good, depth: -200
ag: no info.dat ag: no info.dat, chirps
# 13.11.18 # 13.11.18
aa: good, -30 µm, maybe no reaction aa: good, -30 µm, maybe no reaction, base, chirps
ab: good, -309 µm ab: good, -309 µm, base
ac: poor, -309 µm ac: poor, -309 µm, chirps
ad: fair, -360 µm ad: fair, -360 µm, base, chirps
ae: fair, -350 µm ae: fair, -350 µm
af: good, -440 µm, bursting af: good, -440 µm, bursting, base
ag: fair, -174 µm ag: fair, -174 µm, base
ah: good, -209 µm ah: good, -209 µm, base, chirps, FI, SAM
ai: good, -66.9 µm ai: good, -66.9 µm, base, chirps, SAM
aj: good, -132 µm aj: good, -132 µm, base, chirps
ak: good, -284 µm ak: good, -284 µm, base, chirps
al: good, -286 µm al: good, -286 µm, base, chirps, SAM
# 14.11.18 # 14.11.18
aa: good, -184 µm aa: good, -184 µm, base, chirps, FI, SAM, noise
ab: fair, -279 µm, no reaction ab: fair, -279 µm, no reaction, base
ac: fair, -60 µm ac: fair, -60 µm, base, chirps
ad: good, -357 µm ad: good, -357 µm, base, chirps
ae: fair, -357 µm ae: fair, -357 µm, base
af: fair, -527 µm, only baseline af: fair, -527 µm, base, (chirps)
ag: fair, -533 µm ag: fair, -533 µm, base, chirps
ah: poor, -505 µm ah: poor, -505 µm, chirps
ai: good, -500 µm, still same cell 3x ai: good, -500 µm, still same cell 3x, chirps, FI, noise
aj: poor, -314 µm,no modulation aj: poor, -314 µm, no modulation, base
ak: good, -140 µm ak: good, -140 µm, base, chirps, FI, SAM, noise
al: good, -280 µm al: good, -280 µm, base, chirps, SAM
am: good, -320 µm am: good, -320 µm, base, chirps, FI, SAM, noise
an: good, -434 µm an: good, -434 µm, base, chirps, FI, SAM, noise