jgrewe/fishbook
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tiny changes

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This commit is contained in:
Jan Grewe 2020-07-22 10:16:52 +02:00
parent 5db8c01ed7
commit 537162be00
2 changed files with 2 additions and 3 deletions
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2
fishbook/database/database.py
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@ -528,6 +528,6 @@ if __name__ == "__main__":
# data_dir = "../high_freq_chirps/data" # data_dir = "../high_freq_chirps/data"
# drop_tables() # drop_tables()
# datasets = glob.glob("/Users/jan/zwischenlager/2012-*")2010-06-21-ac/info.dat # datasets = glob.glob("/Users/jan/zwischenlager/2012-*")2010-06-21-ac/info.dat
datasets = glob.glob(os.path.join(data_dir, '/data/apteronotus/2011-*')) datasets = glob.glob(os.path.join(data_dir, '/data/apteronotus/2019-10*'))
populate(datasets, update=False) populate(datasets, update=False)

3
fishbook/database/util.py
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@ -28,7 +28,7 @@ def read_info_file(file_name):
lines = f.readlines() lines = f.readlines()
except UnicodeDecodeError: except UnicodeDecodeError:
print("Replacing experimenter!!!") print("Replacing experimenter!!!")
command = "sudo sed -i '/Experimenter/c\# Experimenter: Anna Stoeckl' %s" % file_name command = r"sudo sed -i '/Experimenter/c\# Experimenter: Anna Stoeckl' %s" % file_name
subprocess.check_call(command, shell=True) subprocess.check_call(command, shell=True)
with open(file_name, 'r') as f: with open(file_name, 'r') as f:
lines = f.readlines() lines = f.readlines()
@ -203,7 +203,6 @@ def read_dataset_info(info_file):
return exp, rec_date, quality, comment, has_nix, rec_duration, setup return exp, rec_date, quality, comment, has_nix, rec_duration, setup
has_nix = len(glob.glob(os.path.sep.join(info_file.split(os.path.sep)[:-1]) + os.path.sep + "*.nix")) > 0 has_nix = len(glob.glob(os.path.sep.join(info_file.split(os.path.sep)[:-1]) + os.path.sep + "*.nix")) > 0
info = read_info_file(info_file) info = read_info_file(info_file)
p = []
exp = _get_string(info, "Experimenter") exp = _get_string(info, "Experimenter")
rec_date = _get_date(info, "Date") rec_date = _get_date(info, "Date")
quality = _get_string(info, "Recording quality") quality = _get_string(info, "Recording quality")