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Jan Grewe 2019-09-18 22:59:38 +02:00
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# How to use the fish book # How to use the fish book
## Requirements ## Requirements
* Python3.5+ only * Python 3.5+ only, **no** python 2
* [datajoint](https://datajoint.io) to connect to the database and to map python objects to table entries. * [datajoint](https://datajoint.io) to connect to the database and to map python objects to table entries.
* [nixio](https://github.com/g-node/nixpy) to read the relacs-flavored nix files * [nixio](https://github.com/g-node/nixpy) to read the relacs-flavored nix files during import or later during data retrieval.
## Installation ## Installation
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1) clone the repository 1) clone the repository
``` ```
git clone https://whale.am28.uni-tuebingen.de/git/jgrewe/fishbook.git . >> git clone https://whale.am28.uni-tuebingen.de/git/jgrewe/fishbook.git
``` ```
2) installation 2. installation
..a) for development, install for the current user, install as "editable" When installing for development: install for the current user, install as "editable":
```Shell
cd fishbook
pip3 install fishbook -e --user
``` ```
b) just for usage >> cd fishbook
>> pip3 install fishbook -e --user
``` ```
pip3 install fishbook --user
When installing for use:
```
>> pip3 install fishbook --user
# or # or
sudo pip3 install fishbook >> sudo pip3 install fishbook
``` ```
3) connecting to the database 3. connecting to the database
Suppose that you intend to work on a project named `foo` use the terminal to navigate to the project directory: `cd foo`