import numpy as np
from scipy.stats import gaussian_kde
from thunderhopper.filetools import crop_paths

def shorten_species(name):
    genus, species = name.split('_')
    return genus[0] + '. ' + species

def unsort_unique(array):
    values, inds = np.unique(array, return_index=True)
    return values[np.argsort(inds)]

def draw_noise_segment(noise, n):
    rng = np.random.default_rng()
    start = rng.integers(0, noise.shape[0] - n, endpoint=True)
    return np.take(noise, np.arange(start, start + n), axis=0)

def sort_files_by_rec(paths, sources=['BM04', 'BM93', 'DJN', 'GBC', 'FTN']):
    # Separate by source:
    sorted_paths = {}
    for source in sources:

        # Check for any source-specific song files:
        source_paths = [path for path in paths if source in path]
        if not source_paths:
            continue

        # Separate by recording:
        sorted_paths[source] = [[]]
        for path, name in zip(source_paths, crop_paths(source_paths)):

            # Find numerical ID behind source tag:
            id_ind = name.find(source) + len(source) + 1
            # Get segment where sub-ID would be:
            sub_id = name[id_ind:].split('-')[1]
            if 's' in sub_id:
                # Found time stamp (single recording):
                sorted_paths[source][0].append(path)
                continue
            sub_id = int(sub_id)
            # Found sub-ID (multiple recordings):
            if sub_id > len(sorted_paths[source]):
                # Open new recording-specific slot:
                sorted_paths[source].append([])
            sorted_paths[source][sub_id - 1].append(path)
    
    # Re-sort song files by recording only (discarding source separation):
    sorted_paths = [path for paths in sorted_paths.values() for path in paths]
    return sorted_paths

def get_kde(data, sigma, axis=None, n=1000, pad=10):
    if axis is None:
        axis = np.linspace(data.min() - pad * sigma, data.max() + pad * sigma, n)
    pdf = gaussian_kde(data, sigma)(axis)
    return pdf, axis

def get_saturation(sigmoid, low=0.05, high=0.95, first=True, last=True,
                   condense=None):
    if condense == 'norm' and sigmoid.ndim == 2:
        sigmoid = np.linalg.norm(sigmoid, axis=1)

    min_value = sigmoid[0] if first else sigmoid.min(axis=0)
    max_value = sigmoid[-1] if last else sigmoid.max(axis=0)
    
    span = max_value - min_value
    low_value = min_value + low * span
    high_value = min_value + high * span

    low_mask = sigmoid <= low_value
    high_mask = sigmoid <= high_value
    if sigmoid.ndim == 1:
        low_ind = np.nonzero(low_mask)[0][-1]
        high_ind = np.nonzero(high_mask)[0][-1]
    elif condense == 'all':
        low_ind = np.nonzero(low_mask.all(axis=1))[0][-1]
        high_ind = np.nonzero(high_mask.all(axis=1))[0][-1]
    else:
        low_ind, high_ind = [], []
        for i in range(sigmoid.shape[1]):
            low_ind.append(np.nonzero(low_mask[:, i])[0][-1])
            high_ind.append(np.nonzero(high_mask[:, i])[0][-1])
    return low_ind, high_ind