import plotstyle_plt import glob import numpy as np import matplotlib.pyplot as plt from itertools import product from thunderhopper.modeltools import load_data from color_functions import load_colors from plot_functions import hide_axis, ylimits, xlabel, ylabel, plot_line, plot_barcode, strip_zeros from IPython import embed def add_snip_axes(fig, grid_kwargs): grid = fig.add_gridspec(**grid_kwargs) axes = np.zeros((grid.nrows, grid.ncols), dtype=object) for i, j in product(range(grid.nrows), range(grid.ncols)): axes[i, j] = fig.add_subplot(grid[i, j]) [hide_axis(ax, 'left') for ax in axes.flatten()] [hide_axis(ax, 'bottom') for ax in axes.flatten()] return axes def plot_snippets(axes, time, snippets, ymin=None, ymax=None, **kwargs): ymin, ymax = ylimits(snippets, minval=ymin, maxval=ymax, pad=0.05) for ax, snippet in zip(axes, snippets.T): plot_line(ax, time, snippet, ymin=ymin, ymax=ymax, **kwargs) return None def plot_bi_snippets(axes, time, binary, **kwargs): for ax, binary in zip(axes, binary.T): plot_barcode(ax, time, binary[:, None], **kwargs) return None # GENERAL SETTINGS: target = 'Omocestus_rufipes' data_paths = glob.glob(f'../data/processed/{target}*.npz') stages = ['filt', 'env', 'log', 'inv', 'conv', 'bi', 'feat'] load_kwargs = dict( files=stages, keywords=['scales', 'measure', 'spread'] ) save_path = None#'../figures/fig_invariance_full.pdf' # GRAPH SETTINGS: fig_kwargs = dict( figsize=(32/2.54, 16/2.54), ) super_grid_kwargs = dict( nrows=len(stages), ncols=3, wspace=0, hspace=0, left=0, right=1, bottom=0, top=1 ) subfig_specs = dict( **{stage: (slice(0, -1), i) for i, stage in enumerate(stages)}, big=(slice(None), -1) ) stage_grid_kwargs = dict( nrows=1, ncols=None, wspace=0.05, hspace=0, left=0.07, right=0.95, bottom=0.15, top=0.9 ) big_grid_kwargs = dict( nrows=1, ncols=1, wspace=0, hspace=0, left=0.15, right=0.96, bottom=0.1, top=0.95 ) # PLOT SETTINGS: colors = load_colors('../data/stage_colors.npz') lw_snippets = dict( raw=0.25, filt=0.25, env=0.5, log=0.5, inv=0.5, conv=0.5, bi=0.01, feat=2 ) lw_big = 3 xlabels = dict( analysis='scale $\\alpha$', ) xlab_analysis_kwargs = dict( y=0.01, fontsize=16, ha='center', va='bottom', ) ylabels = dict( conv='$c_i$', bi='$b_i$', feat='$f_i$', analysis='ratio $\\text{SD}_{\\alpha}\\,/\\,\\text{SD}_{\\min[\\alpha]}$', # analysis='ratio $\\sigma_{\\alpha}\\,/\\,\\sigma_{\\min[\\alpha]}$', ) ylab_snip_kwargs = dict( x=0.01, fontsize=20, rotation=0, ha='left', va='center', ) ylab_analysis_kwargs = dict( x=0.02, fontsize=16, ha='center', va='top', ) # xloc = dict( # analysis=10, # ) # letter_snip_kwargs = dict( # x=0.02, # y=1, # ha='left', # va='top', # fontsize=22, # fontweight='bold' # ) # letter_analysis_kwargs = dict( # x=0, # y=1, # ha='left', # va='top', # fontsize=22, # fontweight='bold' # ) # bar_time = 5 # bar_kwargs = dict( # y0=0.7, # y1=0.8, # color='k', # lw=0, # ) # spread_kwargs = dict( # alpha=0.3, # lw=0, # zorder=0 # ) # kernel_ind = 0 # EXECUTION: for data_path in data_paths: print(f'Processing {data_path}') # Load invariance data: data, config = load_data(data_path, **load_kwargs) t_full = np.arange(data['conv'].shape[0]) / config['env_rate'] # Reduce snippet data to kernel subset: data['conv'] = data['conv'][:, kernel_ind] data['bi'] = data['bi'][:, kernel_ind] data['feat'] = data['feat'][:, kernel_ind] # Prepare overall graph: fig = plt.figure(**fig_kwargs) super_grid = fig.add_gridspec(**super_grid_kwargs) # Prepare pure-song snippet axes: pure_subfig = fig.add_subfigure(super_grid[subfig_specs['pure']]) pure_grid_kwargs['nrows' if pure_grid_kwargs['nrows'] is None else 'ncols'] = data['example_scales'].size pure_axes = add_snip_axes(pure_subfig, pure_grid_kwargs) for ax, stage in zip(pure_axes[:, 0], stages): ylabel(ax, ylabels[stage], **ylab_snip_kwargs, transform=pure_subfig.transSubfigure) for ax, scale in zip(pure_axes[snip_specs['conv']], data['example_scales']): ax.set_title(f'$\\alpha={strip_zeros(scale)}$') pure_subfig.text(s='a', **letter_snip_kwargs) # Prepare analysis axis: analysis_subfig = fig.add_subfigure(super_grid[subfig_specs['analysis']]) analysis_grid = analysis_subfig.add_gridspec(**analysis_grid_kwargs) analysis_ax = analysis_subfig.add_subplot(analysis_grid[0, 0]) analysis_ax.set_xlim(data['scales'].min(), data['scales'].max()) analysis_ax.xaxis.set_major_locator(plt.MultipleLocator(xloc['analysis'])) xlabel(analysis_ax, xlabels['analysis'], **xlab_analysis_kwargs, transform=analysis_subfig.transSubfigure) # analysis_ax.set_yscale('log') ylabel(analysis_ax, ylabels['analysis'], **ylab_analysis_kwargs, transform=analysis_subfig.transSubfigure) analysis_subfig.text(s='c', **letter_analysis_kwargs) # Plot pure-song kernel response snippets: plot_snippets(pure_axes[snip_specs['conv']], t_full, data['conv'], c=colors['conv'], lw=lw_snippets['conv']) # Plot pure-song binary snippets: plot_bi_snippets(pure_axes[snip_specs['bi']], t_full, data['bi'], color=colors['bi'], lw=0) # Plot pure-song feature snippets: plot_snippets(pure_axes[snip_specs['feat']], t_full, data['feat'], ymin=0, ymax=1, c=colors['feat'], lw=lw_snippets['feat']) # Indicate time scale: time_bar(pure_axes[snip_specs['conv']][0], bar_time, **bar_kwargs) # # Plot noise-song kernel response snippets: # plot_snippets(noise_axes[snip_specs['conv']], t_full, noise_data['conv'], # c=colors['conv'], lw=lw_snippets['conv']) # # Plot noise-song binary snippets: # plot_bi_snippets(noise_axes[snip_specs['bi']], t_full, noise_data['bi'], # color=colors['bi'], lw=0) # # Plot noise-song feature snippets: # plot_snippets(noise_axes[snip_specs['feat']], t_full, noise_data['feat'], # ymin=0, ymax=1, c=colors['feat'], lw=lw_snippets['feat']) # # Indicate time scale: # time_bar(noise_axes[snip_specs['conv']][0], bar_time, **bar_kwargs) # Plot noise-song SD ratios (limited): analysis_ax.plot(data['scales'], data['measure_conv'], c=colors['conv'], lw=lw_analysis) lower, upper = data['spread_conv'] analysis_ax.fill_between(data['scales'], lower, upper, color=colors['conv'], **spread_kwargs) analysis_ax.plot(data['scales'], data['measure_feat'], c=colors['feat'], lw=lw_analysis) lower, upper = data['spread_feat'] analysis_ax.fill_between(data['scales'], lower, upper, color=colors['feat'], **spread_kwargs) if save_path is not None: fig.savefig(save_path) plt.show() print('Done.') embed()