from pyparsing import alphanums import plotstyle_plt import numpy as np import matplotlib.pyplot as plt from matplotlib.transforms import BboxTransformTo from itertools import product from thunderhopper.filetools import search_files from thunderhopper.modeltools import load_data from color_functions import load_colors from plot_functions import hide_axis, ylimits, xlabel, ylabel, plot_line, plot_barcode, strip_zeros from IPython import embed def time_bar(ax, dur, y0=0.9, y1=0.95, xshift=0.5, parent=None, transform=None, **kwargs): t0, t1 = ax.get_xlim() offset = (t1 - t0 - dur) * xshift x0 = t0 + offset x1 = x0 + dur if parent is None: parent = ax if transform is None: transform = BboxTransformTo(parent.bbox) if transform is not ax.transData: trans = ax.transData + transform.inverted() x0 = trans.transform((x0, 0))[0] x1 = trans.transform((x1, 0))[0] parent.add_artist(plt.Rectangle((x0, y0), x1 - x0, y1 - y0, transform=transform, **kwargs)) return None def add_snip_axes(fig, grid_kwargs): grid = fig.add_gridspec(**grid_kwargs) axes = np.zeros((grid.nrows, grid.ncols), dtype=object) for i, j in product(range(grid.nrows), range(grid.ncols)): axes[i, j] = fig.add_subplot(grid[i, j]) [hide_axis(ax, 'left') for ax in axes.flatten()] [hide_axis(ax, 'bottom') for ax in axes.flatten()] return axes def plot_snippets(axes, time, snippets, ymin=None, ymax=None, **kwargs): ymin, ymax = ylimits(snippets, minval=ymin, maxval=ymax, pad=0.05) for ax, snippet in zip(axes, snippets.T): plot_line(ax, time, snippet, ymin=ymin, ymax=ymax, **kwargs) return None def plot_bi_snippets(axes, time, binary, **kwargs): for ax, binary in zip(axes, binary.T): plot_barcode(ax, time, binary[:, None], **kwargs) return None # GENERAL SETTINGS: target = 'Omocestus_rufipes' data_paths = search_files(target, excl='noise', dir='../data/inv/thresh_lp/') stages = ['conv', 'bi', 'feat'] files = stages + ['scales', 'example_scales', 'measure_conv', 'spread_conv', 'measure_feat', 'spread_feat'] save_path = '../figures/fig_invariance_thresh_lp.pdf' # GRAPH SETTINGS: fig_kwargs = dict( figsize=(32/2.54, 16/2.54), ) super_grid_kwargs = dict( nrows=2, ncols=2, wspace=0, hspace=0, left=0, right=1, bottom=0, top=1 ) subfig_specs = dict( pure=(0, 0), noise=(1, 0), analysis=(slice(None), 1) ) pure_grid_kwargs = dict( nrows=len(stages), ncols=None, wspace=0.05, hspace=0.1, left=0.13, right=0.95, bottom=0.15, top=0.9 ) noise_grid_kwargs = dict( nrows=len(stages), ncols=None, wspace=0.05, hspace=0.1, left=0.13, right=0.95, bottom=0.15, top=0.9 ) analysis_grid_kwargs = dict( nrows=1, ncols=1, wspace=0, hspace=0, left=0.15, right=0.96, bottom=0.1, top=0.95 ) snip_specs = dict( conv=(0, slice(None)), bi=(1, slice(None)), feat=(2, slice(None)) ) # PLOT SETTINGS: colors = load_colors('../data/stage_colors.npz') lw_snippets = 0.5 lw_analysis = 3 xlabels = dict( analysis='scale $\\alpha$', ) xlab_analysis_kwargs = dict( y=0.01, fontsize=16, ha='center', va='bottom', ) ylabels = dict( conv='$c_i$', bi='$b_i$', feat='$f_i$', analysis='ratio $\\text{SD}_{\\alpha}\\,/\\,\\text{SD}_{\\min[\\alpha]}$', # analysis='ratio $\\sigma_{\\alpha}\\,/\\,\\sigma_{\\min[\\alpha]}$', ) ylab_snip_kwargs = dict( x=0.01, fontsize=20, rotation=0, ha='left', va='center', ) ylab_analysis_kwargs = dict( x=0.02, fontsize=16, ha='center', va='top', ) xloc = dict( analysis=10, ) letter_snip_kwargs = dict( x=0.02, y=1, ha='left', va='top', fontsize=22, fontweight='bold' ) letter_analysis_kwargs = dict( x=0, y=1, ha='left', va='top', fontsize=22, fontweight='bold' ) bar_time = 5 bar_kwargs = dict( y0=0.5, y1=0.6, color='k', lw = 0, ) spread_kwargs = dict( alpha=0.3, lw=0, zorder=0 ) kernel_ind = 0 # EXECUTION: for data_path in data_paths: print(f'Processing {data_path}') # Load invariance data: pure_data, config = load_data(data_path, files) noise_data, _ = load_data(data_path.replace('.npz', '_noise.npz'), files) t_full = np.arange(pure_data['conv'].shape[0]) / config['env_rate'] # Reduce snippet data to kernel subset: pure_data['conv'] = pure_data['conv'][:, kernel_ind] pure_data['bi'] = pure_data['bi'][:, kernel_ind] pure_data['feat'] = pure_data['feat'][:, kernel_ind] noise_data['conv'] = noise_data['conv'][:, kernel_ind] noise_data['bi'] = noise_data['bi'][:, kernel_ind] noise_data['feat'] = noise_data['feat'][:, kernel_ind] # Prepare overall graph: fig = plt.figure(**fig_kwargs) super_grid = fig.add_gridspec(**super_grid_kwargs) # Prepare pure-song snippet axes: pure_subfig = fig.add_subfigure(super_grid[subfig_specs['pure']]) pure_grid_kwargs['nrows' if pure_grid_kwargs['nrows'] is None else 'ncols'] = pure_data['example_scales'].size pure_axes = add_snip_axes(pure_subfig, pure_grid_kwargs) for ax, stage in zip(pure_axes[:, 0], stages): ylabel(ax, ylabels[stage], **ylab_snip_kwargs, transform=pure_subfig.transSubfigure) for ax, scale in zip(pure_axes[snip_specs['conv']], pure_data['example_scales']): ax.set_title(f'$\\alpha={strip_zeros(scale)}$') pure_subfig.text(s='a', **letter_snip_kwargs) # Prepare noise-song snippet axes: noise_subfig = fig.add_subfigure(super_grid[subfig_specs['noise']]) noise_grid_kwargs['nrows' if noise_grid_kwargs['nrows'] is None else 'ncols'] = noise_data['example_scales'].size noise_grid = noise_subfig.add_gridspec(**noise_grid_kwargs) noise_axes = add_snip_axes(noise_subfig, noise_grid_kwargs) for ax, stage in zip(noise_axes[:, 0], stages): ylabel(ax, ylabels[stage], **ylab_snip_kwargs, transform=noise_subfig.transSubfigure) for ax, scale in zip(noise_axes[snip_specs['conv']], noise_data['example_scales']): ax.set_title(f'$\\alpha={strip_zeros(scale)}$') noise_subfig.text(s='b', **letter_snip_kwargs) # Prepare analysis axis: analysis_subfig = fig.add_subfigure(super_grid[subfig_specs['analysis']]) analysis_grid = analysis_subfig.add_gridspec(**analysis_grid_kwargs) analysis_ax = analysis_subfig.add_subplot(analysis_grid[0, 0]) analysis_ax.set_xlim(noise_data['scales'].min(), noise_data['scales'].max()) analysis_ax.xaxis.set_major_locator(plt.MultipleLocator(xloc['analysis'])) xlabel(analysis_ax, xlabels['analysis'], **xlab_analysis_kwargs, transform=analysis_subfig.transSubfigure) # analysis_ax.set_yscale('log') ylabel(analysis_ax, ylabels['analysis'], **ylab_analysis_kwargs, transform=analysis_subfig.transSubfigure) analysis_subfig.text(s='c', **letter_analysis_kwargs) # Plot pure-song kernel response snippets: plot_snippets(pure_axes[snip_specs['conv']], t_full, pure_data['conv'], ymin=0, c=colors['conv'], lw=lw_snippets) # Plot pure-song binary snippets: plot_bi_snippets(pure_axes[snip_specs['bi']], t_full, pure_data['bi'], color=colors['bi'], lw=0) # Plot pure-song feature snippets: plot_snippets(pure_axes[snip_specs['feat']], t_full, pure_data['feat'], c=colors['feat'], lw=lw_snippets) # Indicate time scale: time_bar(pure_axes[snip_specs['conv']][0], bar_time, **bar_kwargs) # Plot noise-song kernel response snippets: plot_snippets(noise_axes[snip_specs['conv']], t_full, noise_data['conv'], ymin=0, c=colors['conv'], lw=lw_snippets) # Plot noise-song binary snippets: plot_bi_snippets(noise_axes[snip_specs['bi']], t_full, noise_data['bi'], color=colors['bi'], lw=0) # Plot noise-song feature snippets: plot_snippets(noise_axes[snip_specs['feat']], t_full, noise_data['feat'], c=colors['feat'], lw=lw_snippets) # Indicate time scale: time_bar(noise_axes[snip_specs['conv']][0], bar_time, **bar_kwargs) # Plot noise-song SD ratios (limited): analysis_ax.plot(noise_data['scales'], noise_data['measure_conv'], c=colors['conv'], lw=lw_analysis) lower, upper = noise_data['spread_conv'] analysis_ax.fill_between(noise_data['scales'], lower, upper, color=colors['conv'], **spread_kwargs) analysis_ax.plot(noise_data['scales'], noise_data['measure_feat'], c=colors['feat'], lw=lw_analysis) lower, upper = noise_data['spread_feat'] analysis_ax.fill_between(noise_data['scales'], lower, upper, color=colors['feat'], **spread_kwargs) if save_path is not None: fig.savefig(save_path) plt.show() print('Done.') embed()