Added multi-thresh simulation to "full" and "short" (currently running).

Added complete "rect-lp" analysis except figure.
Added multiple appendix figs.
Overhauled normalization options across all condense scripts.

Co-authored-by: Copilot <copilot@github.com>

python/condense_inv_data_full.py

@@ -28,9 +28,18 @@ save_path = '../data/inv/full/condensed/'
 # ANALYSIS SETTINGS:
 normalization = [
     'none',
+    'min',
+    'max',
     'base',
-    'range'
+    'range',
     ][2]
+suffix = dict(
+    none='_unnormed',
+    min='_norm-min',
+    max='_norm-max',
+    base='_norm-base',
+    range='_norm-range'
+)[normalization]
 
 # EXECUTION:
 for i, species in enumerate(target_species):
@@ -69,7 +78,13 @@ for i, species in enumerate(target_species):
             for stage in stages:
                 mkey = f'measure_{stage}'
 
-                if normalization == 'base':
+                if normalization == 'min':
+                    # Minimum normalization:
+                    data[mkey] /= data[mkey].min(axis=0, keepdims=True)
+                elif normalization == 'max':
+                    # Maximum normalization:
+                    data[mkey] /= data[mkey].max(axis=0, keepdims=True)
+                elif normalization == 'base':
                     # Noise baseline normalization:
                     data[mkey] /= data[mkey][0]
                 elif normalization == 'range':
@@ -86,16 +101,9 @@ for i, species in enumerate(target_species):
             rec_sd[f'sd_{stage}'][..., j] = np.nanstd(file_data[stage], axis=-1)
 
     # Save condensed recording data:
-    save_name = save_path + species
-    if normalization == 'none':
-        save_name += '_unnormed'
-    elif normalization == 'base':
-        save_name += '_norm-base'
-    elif normalization == 'range':
-        save_name += '_norm-range'
     archive = dict(scales=data['scales'])
     archive.update(rec_mean)
     archive.update(rec_sd)
-    save_data(save_name, archive, config, overwrite=True)
+    save_data(save_path + species + suffix, archive, config, overwrite=True)
 
 print('Done.')