Added multi-thresh simulation to "full" and "short" (currently running).

Added complete "rect-lp" analysis except figure.
Added multiple appendix figs.
Overhauled normalization options across all condense scripts.

Co-authored-by: Copilot <copilot@github.com>

python/collect_inv_data_short.py

@@ -13,7 +13,7 @@ target_species = [
     'Omocestus_rufipes',
     'Pseudochorthippus_parallelus',
 ]
-stages = ['filt', 'env', 'conv', 'feat']
+stages = ['filt', 'env', 'inv', 'conv', 'feat']
 search_path = '../data/inv/short/'
 save_path = '../data/inv/short/collected/'