Built color selection infrastructure and assigned stage-specific colors (WIP).

Added 2 plots to methods (WIP).

python/plotstyle_plt.py

@@ -8,15 +8,18 @@ mpl.rcParams['font.style'] = 'normal'
 mpl.rcParams['font.family'] = 'serif'
 mpl.rcParams['mathtext.fontset'] = 'cm'
 mpl.rcParams['mathtext.default'] = 'regular'
+
 # Font sizes:
 mpl.rcParams['font.size'] = 14
 mpl.rcParams['figure.titlesize'] = 15
+mpl.rcParams['figure.labelsize'] = 14
 mpl.rcParams['axes.labelsize'] = 14
 mpl.rcParams['axes.titlesize'] = 14
 mpl.rcParams['xtick.labelsize'] = 13
 mpl.rcParams['ytick.labelsize'] = 13
 mpl.rcParams['legend.fontsize'] = 14
 mpl.rcParams['legend.title_fontsize'] = 14
+
 # Font weights:
 single_weight = ['normal', 'bold'][0]
 mpl.rcParams['font.weight'] = single_weight
@@ -32,6 +35,7 @@ mpl.rcParams['figure.raise_window'] = True
 # mpl.rcParams['savefig.dpi'] = 500
 
 # Axes parameters:
+mpl.rcParams['axes.linewidth'] = 1.5
 mpl.rcParams['axes.spines.top'] = False
 mpl.rcParams['axes.spines.right'] = False
 mpl.rcParams['axes.xmargin'] = 0
@@ -39,10 +43,20 @@ mpl.rcParams['axes.ymargin'] = 0
 mpl.rcParams['axes.autolimit_mode'] = 'round_numbers'
 mpl.rcParams['axes.labelpad'] = 3
 
-# Tick parameters:
-mpl.rcParams['xtick.major.pad'] = 5
-mpl.rcParams['ytick.major.pad'] = 5
+# Major tick parameters:
+mpl.rcParams['xtick.major.size'] = 5
+mpl.rcParams['xtick.major.width'] = 1.5
+mpl.rcParams['xtick.major.pad'] = 3.5
+mpl.rcParams['ytick.major.size'] = 5
+mpl.rcParams['ytick.major.width'] = 1.5
+mpl.rcParams['ytick.major.pad'] = 3.5
+
+# Minor tick parameters:
+mpl.rcParams['xtick.minor.size'] = 2
+mpl.rcParams['xtick.minor.width'] = 1
+mpl.rcParams['ytick.minor.size'] = 2
+mpl.rcParams['ytick.minor.width'] = 1
 
 # Legend parameters:
 mpl.rcParams['legend.frameon'] = False
-mpl.rcParams['legend.scatterpoints'] = 3
+mpl.rcParams['legend.scatterpoints'] = 3