488 lines
12 KiB
INI
488 lines
12 KiB
INI
*Metadata
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Recording:
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Recording quality: [ good, good, poor, Poor, Fair, Good ]
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Comment : ~
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Experimenter : [ Jan Benda & Jan Grewe, Jan Benda & Jan Grewe, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
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WaterTemperature : 25.6°C
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WaterConductivity: 225uS/cm
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Cell:
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Structure (Recording location): [ Nerve, Nerve, Brain ]
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Subject:
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Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
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Gender (Sex): [ unknown, unknown, Male, Female ]
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Size : 16.5cm
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Weight : 11.3g
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Identifier : "2014lepto30"
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-Preparation-:
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Type : [ in vivo, in vivo, slice ]
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Anaesthesia : true
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Anaesthetic (Drug) : MS 222
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AnaestheticDose (Concentration): 125mg/l
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LocalAnaesthesia : true
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LocalAnaesthetic (Drug) : Lidocaine
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Immobilization : true
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Immobilization (Drug) : Tubocurarin 5mg/L
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ImmobilizationDose : 60ul
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*Control: Session
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ephys: true
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*Control: SpectrumAnalyzer
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intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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origin : [ before end of data, before signal, after signal ]
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offset : 0ms
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duration: 1000ms
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size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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fmax : 500Hz
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decibel : true
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pmin : -50dB
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*Model: PUnitModel
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General:
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EOD:
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eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
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eodfreq : 800Hz
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eodfreqsd : 10Hz
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eodfreqtau : 1000s
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eodlocalamplitude : 1mV/cm
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eodglobalamplitude: 1mV/cm
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localstimulusgain : 1.00
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globalstimulusgain: 0.00
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stimulusgain : 1.00
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Spikes:
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voltagescale: 0.5
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Spike generator:
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spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
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noised : 0
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deltat : 0.05ms
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integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
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Voltage-gated current 1 - activation only:
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gmc : 0
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emc : -90mV
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mvmc : -40mV
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mwmc : 10mV
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taumc: 10ms
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Voltage-gated current 2 - activation and inactivation:
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gmhc : 0
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emhc : -90mV
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mvmhc : -40mV
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mwmhc : 10mV
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taummhc: 10ms
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pmmhc : 1
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hvmhc : -40mV
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hwmhc : 10mV
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tauhmhc: 10ms
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pmhhc : 1
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*Model: Stimulus
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Model: Morris-Lecar
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General:
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params: [ Custom, Type I, Type II ]
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Calcium current:
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gca : 4nS
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eca : 120mV
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mvca: -1.2mV
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mkca: 18mV
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Potassium current:
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gk : 8nS
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ek : -84mV
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mvk : 12mV
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mkk : 17.4mV
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mphik: 0.067kHz
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Leak current:
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gl: 2nS
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el: -60mV
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c : 20pF
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Input:
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timescale: 10
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gain : 1
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offset : 40muA/cm^2
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*Model: Hodgkin-Huxley
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Sodium current:
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gna: 120mS/cm^2
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ena: 50mV
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Potassium current:
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gk: 36mS/cm^2
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ek: -77mV
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Leak current:
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gl : 0.3mS/cm^2
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el : -54.4mV
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c : 1muF/cm^2
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phi: 1
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Model: Connor
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Sodium current:
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gna: 120mS/cm^2
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ena: 50mV
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Potassium current:
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gk: 20mS/cm^2
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ek: -77mV
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A current:
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gka: 47mS/cm^2
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eka: -80mV
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Leak current:
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gl : 0.3mS/cm^2
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el : -22mV
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c : 1muF/cm^2
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phi: 1
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Model: Wang-Buzsaki
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Sodium current:
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gna: 35mS/cm^2
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ena: 55mV
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Potassium current:
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gk: 9mS/cm^2
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ek: -90mV
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Leak current:
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gl : 0.1mS/cm^2
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el : -65mV
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c : 1muF/cm^2
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phi: 5
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Event Detector: EOD
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threshold : 1.9mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*Event Detector: LocalEOD-1
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threshold : 3.1mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*Event Detector: LocalBeat-1
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minthresh: 0.150mV
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decay : 1sec
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ratio : 35%
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*Event Detector: GlobalEFieldStimulus
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threshold : 36.356mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*RePro: Pause
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duration: 1000ms
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repeats : 0
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savedata: false
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*RePro: Record
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duration: 1000ms
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repeats : 0
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*RePro: SaveTraces
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General:
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duration: 1000ms
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repeats : 0
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savedata: false
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split : false
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Analog input traces:
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trace-Nerve-1 : true
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trace-EOD : true
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trace-LocalEOD-1 : true
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trace-GlobalEFieldStimulus: true
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Events:
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events-EOD : true
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events-LocalEOD-1 : true
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events-LocalBeat-1-1 : true
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events-LocalBeat-1-2 : true
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events-GlobalEFieldStimulus: true
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*RePro: SetInputGain
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intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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gainindex : 0
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interactive: true
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*RePro: SetOutput
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outtrace : [ GlobalEField, GlobalEFieldAM ]
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value : 0V
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interactive: false
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*RePro: Spectrogram
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intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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width : 100ms
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step : 0ms
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tmax : 10s
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duration: 0s
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size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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powermax: true
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fmax : 2000Hz
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pmax : 0dB
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pmin : -50dB
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*RePro: TransferFunction
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Stimulus:
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outtrace : [ GlobalEField, GlobalEFieldAM ]
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offsetbase: [ custom, current ]
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offset : 0V
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amplitude : 1V
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intensity : 1
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fmax : 1000Hz
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duration : 1000ms
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pause : 1000ms
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repeats : 100
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Analysis:
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intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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plotstdevs : true
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plotcoherence: true
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*RePro: Wait
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absdate: false
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date : ~
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days : 0days
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time : "00:00:00.000"
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*RePro: BridgeTest
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amplitude: 1V
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duration : 10ms
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pause : 100ms
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average : 10
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plottrace: true
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*RePro: CapacityCompensation
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amplitude : 1V
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duration : 200ms
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frequency : 100Hz
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skipcycles: 10
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pause : 100ms
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*RePro: Iontophoresis
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durationpos : 1s
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amplitudepos : 1V
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pausepos : 1s
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durationneg : 1s
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amplitudeneg : 1V
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pauseneg : 1s
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fortunes : true
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fortuneperiod: 10s
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*RePro: Beats
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Stimulation:
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duration : 10seconds
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pause : 20seconds
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ramp : 0.5seconds
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deltafrange : "10"
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deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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fixeddf : false
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amplitude : 1mV/cm
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repeats : 10
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fakefish : 0Hz
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Chirps:
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generatechirps : false
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chirpsize : 100Hz
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chirpwidth : 100ms
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chirpampl : 0%
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chirpkurtosis : 1
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chirpfrequencies: ~
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chirptimesfile : ~
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Analysis:
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before : 1seconds
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after : 1seconds
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averagetime : 1seconds
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showstimulus: false
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split : false
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savetraces : false
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*RePro: CalibEField
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General:
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reset : false
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resetval : 0.1
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am : false
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beatfreq : 20Hz
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frequency: 600Hz
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duration : 600ms
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pause : 10ms
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Range:
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amplsel : [ contrast, amplitude ]
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targetcontrast : 20%
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mincontrast : 10%
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maxcontrast : 40%
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targetamplitude: 1mV/cm
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minamplitude : 0.5mV/cm
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maxamplitude : 2mV/cm
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numintensities : 10
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*RePro: JAR
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Stimulation:
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duration : 10seconds
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pause : 10seconds
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ramp : 0.5seconds
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deltafstep : 2Hz
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deltafmax : 12Hz
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deltafmin : -12Hz
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deltafrange : ~
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deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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repeats : 200
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Amplitudes:
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amplsel : [ contrast, absolute ]
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contrastmax : 20%
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contrastmin : 10%
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contraststep: 20%
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amplmin : 1mV/cm
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amplmax : 2mV/cm
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amplstep : 1mV/cm
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S&timulus:
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genstim : true
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sinewave: true
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file : ~
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sigstdev: 1
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warpfile: false
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fakefish: 0Hz
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A&nalysis:
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before : 1seconds
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after : 8seconds
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savetraces : true
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jaraverage : 500ms
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chirpaverage: 20ms
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eodsavetime : 1000ms
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*RePro: LinearField
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duration: 1s
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*RePro: ManualJAR
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duration : 10seconds
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ramp : 0.5seconds
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fakefish : 0Hz
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before : 1seconds
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after : 1seconds
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averagetime: 1seconds
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split : false
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savetraces : false
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*RePro: BaselineActivity
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Timing:
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duration: 300ms
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repeats : 0
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Analysis:
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isimax : 20ms
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isistep : 0.2ms
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ratedt : 0.05ms
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ratetmax: 2ms
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Files:
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eodduration : 2000ms
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saveeodtrace: true
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saveeodtimes: false
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Control:
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auto : [ always, never, once, always ]
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adjust: false
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*RePro: Chirps
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Chirp parameter:
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nchirps : 10
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beatpos : 10
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beatstart : 0.25
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minspace : 200ms
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firstspace : 200ms
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chirpsize : 60Hz
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chirpwidth : 14ms
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chirpampl : 2%
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chirpsel : [ generated, from file ]
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chirpkurtosis: 1
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file : ~
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Beat parameter:
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deltaf : 10Hz
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contrast: 20%
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am : true
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sinewave: true
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playback: false
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pause : 1000ms
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repeats : 16
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Analysis:
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sigma : 1ms
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adjust: false
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*RePro: FICurve
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Test-Intensities:
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duration : 400ms
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maxintfac : 140%
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minintfac : 60%
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nints : 8
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repeats : 1
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blockrepeats : 6
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singlerepeats: 1
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intshuffle : [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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intincrement : 2
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Pre-Intensities:
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preduration : 0ms
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maxpreintfac : 100%
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minpreintfac : 100%
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npreints : 2
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preintshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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Control:
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am : false
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pause : 1000ms
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delay : 200ms
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onsettime : 50ms
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rangeintincrement: 1
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minrate : 0Hz
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minratefrac : 0%
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adjust : true
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*RePro: FileStimulus
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Stimulus:
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file : ~
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sigstdev : 1
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duration : 0ms
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pause : 1000ms
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amplsel : [ contrast, absolute ]
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contrast : 20%
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amplitude: 1mV/cm
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am : true
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repeats : 50
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Additional noise:
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noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
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uppercutoff : 0Hz
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lowercutoff : 0Hz
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noisetau : 0ms
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noisecontrast: 0%
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noiseampl : 0mV/cm
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Analysis:
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binwidth: 5ms
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before : 0ms
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after : 0ms
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plotpsd : false
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psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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adjust : false
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*RePro: SAM
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Stimulus:
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duration: 400ms
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pause : 100ms
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freqsel : [ absolute, relative to EOD, absolute ]
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deltaf : 20Hz
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contrast: 20%
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repeats : 0
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am : false
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sinewave: true
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Analysis:
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skip : 0.5Periods
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ratebins: 10
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before : 0ms
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after : 0ms
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adjust : false
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*Attenuator-0
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gain : 0.69356
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offset: 0
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*Attenuator-1
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gain : 0.062252
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offset: 0
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