817 lines
21 KiB
INI
817 lines
21 KiB
INI
*Metadata
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Recording:
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Recording quality: [ Good, lost at end with comb, lost at end single object only, Good, ~, good, poor, Poor, Fair ]
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Comment : All three combs used
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Experimenter : [ Carolin Sachgau, MZ/TH, Tim Hladnik, Martin Zeller, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
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WaterTemperature : 23.6°C
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WaterConductivity: 268uS/cm
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Cell:
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CellType (Cell type) : [ Pyramidal, Pyramidal, Unknown, E-cell, E-cell deep, unknow, E-Cell, unkown, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
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Structure (Recording location): [ Brain, Nerve, Brain ]
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BrainRegion : [ ELL, ELL, Torus, n.A. ]
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BrainSubRegion : [ CLS, CLS, Pyramidal, Unknown, CMS, ~, LS, MS ]
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Depth : -938um
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Lateral position : -1.5mm
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Transverse section : -9
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Subject:
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Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
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Gender (Sex): [ unknown, unknown, Male, Female ]
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Size : 15.5cm
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Weight : 7.8g
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Identifier : "2018lepto77"
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-Preparation-:
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Type : [ in vivo, in vivo, slice ]
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Anaesthesia : true
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Anaesthetic (Drug) : MS 222
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AnaestheticDose (Concentration): 100mg/l
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LocalAnaesthesia : true
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LocalAnaesthetic (Drug) : Lidocaine
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Immobilization : true
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ImmobilizationDrug (Drug) : Tubocurarin 5mg/L
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ImmobilizationDose : 100ul
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*Control: Session
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ephys: true
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*Control: Robot
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General:
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robot: robot-2
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Stored positions:
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FishHeadPosition : [ 418.75mm, 343.39mm, 219.11mm ]
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FishTailPosition : [ 418.75mm, 221.08mm, 219.11mm ]
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MovementAreaStart : [ 0mm, 0mm, 0mm ]
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MovementAreaEnd : [ 0mm, 0mm, 0mm ]
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ForbiddenAreaStart: 0.499mm
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ForbiddenAreaEnd : 340mm
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CustomPosition : [ 400mm, 0mm, 0mm ]
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Tool clamp:
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toolreleasedelay: 1s
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toolfixdelay : 2.5s
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autoclamp : true
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*Control: AmplifierControl
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initmode : [ Bridge, Current-clamp, Dynamic-clamp, Voltage-clamp, Manual selection ]
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resistancecurrent: 1nA
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adjust : false
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maxresistance : 100MOhm
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buzzpulse : 500ms
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showswitchmessage: true
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showbridge : true
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showcc : false
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showdc : false
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showvc : false
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showmanual : false
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syncpulse : 10us
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syncmode : 0samples
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vcgain : 100
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vctau : 1ms
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*Control: SpectrumAnalyzer
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intrace : [ LocalEOD-1, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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origin : [ before end of data, before signal, after signal ]
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offset : 0ms
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duration : 1000ms
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resolution: 10Hz
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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fmax : 500Hz
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decibel : true
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peak : true
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pmin : -50dB
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*Model: PUnitModel
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General:
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EOD:
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eodtype : [ Apteronotus, None, Sine, Apteronotus, Eigenmannia ]
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eodfreq : 800Hz
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eodfreqsd : 10Hz
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eodfreqtau : 10000s
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eodlocalamplitude : 1mV/cm
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eodglobalamplitude: 1mV/cm
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localstimulusgain : 5.00
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globalstimulusgain: 0.00
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stimulusgain : 1.00
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Spikes:
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voltagescale: 0.5
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General:
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Spike generator:
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spikemodel: [ Wang-Buzsaki, Stimulus, Passive membrane, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
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noised : 0.1
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deltat : 0.05ms
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integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
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Voltage clamp:
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vcgain: 10
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vctau : 0.1ms
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Currents:
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Voltage-gated current 1 - activation only:
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gmc : 2
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emc : -90mV
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mvmc : -35mV
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mwmc : 10mV
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taumc: 30ms
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Voltage-gated current 2 - activation and inactivation:
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gmhc : 0
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emhc : -90mV
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mvmhc : -40mV
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mwmhc : 10mV
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taummhc: 10ms
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pmmhc : 1
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hvmhc : -40mV
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hwmhc : 10mV
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tauhmhc: 10ms
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pmhhc : 1
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*Model: Stimulus
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Model: Passive membrane
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Parameter:
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R: 50MOhm
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C: 25pF
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Input:
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gain : 1
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offset: 0muA/cm^2
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*Model: Morris-Lecar
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General:
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params: [ Custom, Type I, Type II ]
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Calcium current:
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gca : 4nS
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eca : 120mV
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mvca: -1.2mV
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mkca: 18mV
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Potassium current:
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gk : 8nS
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ek : -84mV
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mvk : 12mV
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mkk : 17.4mV
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mphik: 0.067kHz
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Leak current:
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gl: 2nS
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el: -60mV
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c : 20pF
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Input:
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timescale: 10
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gain : 1
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offset : 0muA/cm^2
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*Model: Hodgkin-Huxley
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Sodium current:
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gna: 120mS/cm^2
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ena: 50mV
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Potassium current:
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gk: 36mS/cm^2
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ek: -77mV
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Leak current:
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gl : 0.3mS/cm^2
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el : -54.4mV
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c : 1muF/cm^2
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phi: 1
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Input:
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gain : 50
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offset: 10muA/cm^2
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*Model: Connor
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Sodium current:
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gna: 120mS/cm^2
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ena: 50mV
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Potassium current:
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gk: 20mS/cm^2
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ek: -77mV
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A current:
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gka: 47mS/cm^2
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eka: -80mV
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Leak current:
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gl : 0.3mS/cm^2
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el : -22mV
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c : 1muF/cm^2
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phi: 1
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Input:
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gain : 50
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offset: 30muA/cm^2
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*Model: Wang-Buzsaki
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Sodium current:
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gna: 35mS/cm^2
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ena: 55mV
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Potassium current:
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gk: 9mS/cm^2
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ek: -90mV
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Leak current:
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gl : 0.1mS/cm^2
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el : -65mV
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c : 1muF/cm^2
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phi: 5
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Input:
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gain : 50
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offset: 6muA/cm^2
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*Event Detector: Spikes-1
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Detector:
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minthresh: 5.0mV
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ratio : 10%
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testwidth: false
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fitwidth : 3.00ms
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*Event Detector: EOD
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threshold : 0.1mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*Event Detector: Chirps
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minthresh: 10Hz
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*Event Detector: LocalEOD-1
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threshold : 0.41mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*Event Detector: LocalBeat-1
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minthresh: 0.040mV
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ratio : 35%
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*Event Detector: GlobalEFieldStimulus
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threshold : 1.8129mV
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interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
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*RePro: Pause
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duration : 0sec
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savedata : false
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plotwidth: 0sec
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*RePro: Record
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duration : 1sec
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plotwidth: 0sec
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dioout : false
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diodevice: dio-1
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dioline : 0
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*RePro: SaveTraces
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General:
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duration : 1sec
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savedata : false
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split : false
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dioout : false
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diodevice: dio-1
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dioline : 0
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Analog input traces:
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trace-V-1 : true
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trace-EOD : true
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trace-LocalEOD-1 : true
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trace-GlobalEFieldStimulus: true
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Events:
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events-Spikes-1 : true
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events-EOD : true
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events-Chirps : true
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events-LocalEOD-1 : true
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events-LocalBeat-1-1 : true
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events-LocalBeat-1-2 : true
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events-GlobalEFieldStimulus: true
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*RePro: SetAttenuatorGain
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outrace : V-1
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gain : 1
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interactive: true
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*RePro: SetDigitalOutput
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device : dio-1
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line : 0
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value : 0
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interactive: false
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*RePro: SetInputGain
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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gainindex : 3
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interactive: true
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*RePro: SetOutput
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outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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value : 0V
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intensity : 1
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interactive: false
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*RePro: Spectrogram
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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width : 100ms
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step : 0ms
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tmax : 10s
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duration: 0s
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size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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powermax: true
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fmax : 2000Hz
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pmax : 0dB
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pmin : -50dB
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*RePro: TransferFunction
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Stimulus:
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outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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offsetbase: [ custom, current ]value
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offset : 0V
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amplitude : 1V
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clip : 4
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intensity : 1
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fmin : 0Hz
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fmax : 1000Hz
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duration : 1s
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pause : 1s
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repeats : 100
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Analysis:
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
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overlap : true
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window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
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plotstdevs : true
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plotcoherence: true
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plotdecibel : false
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*RePro: Wait
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absdate: false
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date : ~
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days : 0days
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time : "00:00:00.000"
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*RePro: AttenuatorCheck
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outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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duration : 1s
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type : [ attenuation, noise ]
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frequency: 50Hz
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amplitude: 1Vmax
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minlevel : 0dB
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maxlevel : 100dB
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dlevel : 1dB
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adjust : true
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*RePro: InputRangeCheck
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outtrace: [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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duration: 1000ms
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pause : 1000ms
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amplnum : 10
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*RePro: RestartDelay
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duration: 100ms
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repeats : 100
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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*RePro: StimulusDelay
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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intensity : 1
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samplerate: 10kHz
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duration : 10ms
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pause : 50ms
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repeats : 100
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setdelay : [ none, minimum, mean ]
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*RePro: BridgeTest
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amplitude : 1V
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duration : 10ms
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pause : 100ms
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average : 10
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skipspikes : true
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dynamicrange: false
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rate : 0.01
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plottrace : true
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*RePro: CalibrateSyncPulse
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imin : -1
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imax : 1
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istep : 0.001
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skipwin : 1000ms
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duration: 1000ms
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*RePro: CapacityCompensation
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amplitude : 1V
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duration : 200ms
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frequency : 100Hz
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showcycles : 10
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pause : 100ms
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average : 10
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skipspikes : true
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dynamicrange: false
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rate : 0.01
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*RePro: Iontophoresis
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durationpos : 1s
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amplitudepos : 1V
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pausepos : 1s
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durationneg : 1s
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amplitudeneg : 1V
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pauseneg : 1s
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fortunes : true
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fortuneperiod: 10s
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*RePro: SetLeak
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interactive : true
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preset : [ previous, zero, custom ]values
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g : 0nS
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E : 0mV
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reversaltorest: true
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involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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duration : 100ms
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*RePro: SetVGate
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interactive : true
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preset : [ previous, zero, custom ]values
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g : 0nS
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E : 0mV
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vmid : 0mV
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width : 0mV
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tau : 10ms
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reversaltorest: true
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involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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duration : 100ms
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*RePro: Beats
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Stimulation:
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name : ~
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duration : 10seconds
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pause : 20seconds
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ramp : 0.5seconds
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deltafrange : "10"Hz
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deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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fixeddf : false
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amplitude : 1mV/cm
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amtype : [ none, sine, rectangular ]
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amfreq : "1"Hz
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amamplitude : "100"%
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repeats : 10
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fakefish : 0Hz
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Chirps:
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generatechirps : false
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chirpsize : 100Hz
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chirpwidth : 100ms
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chirpampl : 0%
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chirpkurtosis : 1
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chirpfrequencies: ~Hz
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chirptimesfile : ~
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chirptimeshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
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Analysis:
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before : 1seconds
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after : 1seconds
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averagetime : 1seconds
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usepsd : true
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mineodfreq : 100Hz
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maxeodfreq : 2000Hz
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eodfreqprec : 1Hz
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neod : 2
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showstimulus: false
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split : false
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savetraces : false
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*RePro: CalibEField
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General:
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reset : true
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resetval : 0.1
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am : true
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beatfreq : 10Hz
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frequency: 670Hz
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duration : 600ms
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pause : 10ms
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Range:
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amplsel : [ contrast, amplitude ]
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targetcontrast : 15%
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mincontrast : 10%
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maxcontrast : 20%
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targetamplitude: 1mV/cm
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minamplitude : 0.5mV/cm
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maxamplitude : 2mV/cm
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numintensities : 8
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*RePro: CalibrateRobot
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robot: robot-2
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*RePro: DualBeat
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Stimulus:
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rewarded : [ A, B ]
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eodf : 0.0Hz
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duration : 10seconds
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deltafA : 25.0Hz
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harmonicA : false
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amplitudeA: 1.000V
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deltafB : -50.0Hz
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harmonicB : false
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amplitudeB: 1.000V
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Experiment:
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noFish : false
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randomizeAmpl : true
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amplitudeRange : 20%
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randomSminus : false
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sminusRange : 200Hz
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training : true
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randomElectrode : true
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rewardedElectrode: [ "1", "2" ]
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trainingTrials : 10
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testTrials : 5
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testBeat : -25.0Hz
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testAmplitude : 1.000V
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stimOff : true
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rewardInTest : true
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harmonic : true
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Setup:
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scaling1: 1.000
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scaling2: 1.000
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EOD estimation:
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intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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usepsd : true
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mineodfreq : 100Hz
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maxeodfreq : 2000Hz
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eodfreqprec: 1Hz
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averagetime: 2s
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*RePro: EFieldGeometry
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Enviroment data:
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temperature : 26°C
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conductivity: 330µS
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water_level : 20cm
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Measurement data:
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robot : robot-2
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type : ~
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distance : 0mm
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head_length : 20mm
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tail_length : 20mm
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width_posY : 50mm
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width_negY : 50mm
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height : 50mm
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depth : 50mm
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step_length_x: 5mm
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step_length_y: 5mm
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step_length_z: 5mm
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*RePro: JAR
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Stimulation:
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duration : 10seconds
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pause : 10seconds
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ramp : 0.5seconds
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deltafstep : 2Hz
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deltafmax : 12Hz
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deltafmin : -12Hz
|
|
deltafrange : ~
|
|
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
|
repeats : 200
|
|
Amplitudes:
|
|
amplsel : [ contrast, absolute ]
|
|
contrastmax : 20%
|
|
contrastmin : 10%
|
|
contraststep: 20%
|
|
amplmin : 1mV/cm
|
|
amplmax : 2mV/cm
|
|
amplstep : 1mV/cm
|
|
S&timulus:
|
|
genstim : true
|
|
sinewave: true
|
|
file : ~
|
|
sigstdev: 1
|
|
warpfile: false
|
|
fakefish: 0Hz
|
|
A&nalysis:
|
|
before : 1seconds
|
|
after : 8seconds
|
|
savetraces : true
|
|
jaraverage : 500ms
|
|
chirpaverage: 20ms
|
|
eodsavetime : 1000ms
|
|
|
|
*RePro: LinearField
|
|
duration: 1s
|
|
|
|
*RePro: ManualJAR
|
|
deltaf : 0.0Hz
|
|
lineardeltaf : false
|
|
deltaf2 : 0.0Hz
|
|
amplitude : 1.0mV
|
|
duration : 10seconds
|
|
ramp : 0.5seconds
|
|
fakefish : 0Hz
|
|
showlineardeltaf: false
|
|
before : 1seconds
|
|
after : 1seconds
|
|
averagetime : 1seconds
|
|
split : false
|
|
savetraces : false
|
|
|
|
*RePro: BaselineActivity
|
|
Timing:
|
|
duration: 300ms
|
|
repeats : 0
|
|
Analysis:
|
|
isimax : 20ms
|
|
isistep : 0.2ms
|
|
ratedt : 0.05ms
|
|
ratetmax: 2ms
|
|
Files:
|
|
eodduration : 2000ms
|
|
saveeodtrace: false
|
|
saveeodtimes: false
|
|
Control:
|
|
auto : [ never, once, always ]
|
|
adjust: false
|
|
|
|
*RePro: Chirps
|
|
Chirp parameter:
|
|
nchirps : 10
|
|
beatpos : 10
|
|
beatstart : 0.25
|
|
minspace : 200ms
|
|
firstspace : 200ms
|
|
chirpsize : 100Hz
|
|
chirpwidth : 14ms
|
|
chirpampl : 2%
|
|
chirpsel : [ generated, from file ]
|
|
chirpkurtosis: 1
|
|
file : ~
|
|
Beat parameter:
|
|
deltaf : 10Hz
|
|
contrast: 20%
|
|
am : true
|
|
sinewave: true
|
|
playback: false
|
|
pause : 1000ms
|
|
repeats : 6
|
|
Analysis:
|
|
sigma : 2ms
|
|
adjust: true
|
|
|
|
*RePro: FICurve
|
|
Test-Intensities:
|
|
duration : 400ms
|
|
maxintfac : 130%
|
|
minintfac : 70%
|
|
nints : 16
|
|
repeats : 1
|
|
blockrepeats : 10
|
|
singlerepeats: 1
|
|
intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
|
intincrement : -2
|
|
Pre-Intensities:
|
|
preduration : 0ms
|
|
maxpreintfac : 140%
|
|
minpreintfac : 60%
|
|
npreints : 2
|
|
preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
|
Control:
|
|
am : true
|
|
pause : 1000ms
|
|
delay : 200ms
|
|
onsettime : 50ms
|
|
rangeintincrement: 4
|
|
minrate : 40Hz
|
|
minratefrac : 15%
|
|
adjust : false
|
|
|
|
*RePro: FileStimulus
|
|
Stimulus:
|
|
file : /home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat
|
|
name : ~
|
|
sigstdev : 0.3
|
|
duration : 0ms
|
|
pause : 1000ms
|
|
amplsel : [ contrast, absolute ]
|
|
contrast : 5%
|
|
amplitude: 1mV/cm
|
|
am : true
|
|
repeats : 5
|
|
Additional noise:
|
|
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
|
|
uppercutoff : 300Hz
|
|
lowercutoff : 0Hz
|
|
noisetau : 100ms
|
|
noisecontrast: 5%
|
|
noiseampl : 80mV/cm
|
|
Analysis:
|
|
binwidth: 5ms
|
|
before : 0ms
|
|
after : 0ms
|
|
plotpsd : true
|
|
psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
|
adjust : false
|
|
|
|
*RePro: MovingObjects
|
|
Movement:
|
|
startpos : [ -60mm, 0mm, -8mm ]
|
|
traveldist : 120mm
|
|
travelspeed : 10mm/s
|
|
movementaxis: [ x, y, z ]
|
|
repeats : 4
|
|
pause : 0.1s
|
|
object : [ small, pvc comb 4cm, pvc comb 1cm, perspex bar, metal sphere, small ]
|
|
Parameter space:
|
|
distmin : 0mm
|
|
distmax : 0mm
|
|
diststep : 10mm
|
|
speedmin : 40mm/s
|
|
speedmax : 240mm/s
|
|
speedstep: 40mm/s
|
|
Robot setup:
|
|
xmapping: [ y, z, x ]
|
|
xinvert : true
|
|
ymapping: [ z, x, y ]
|
|
yinvert : false
|
|
zmapping: [ x, y, z ]
|
|
zinvert : false
|
|
safepos : [ 450, 0, 0 ]
|
|
outpos : [ 450, 300, 100 ]
|
|
|
|
*RePro: ReceptiveField
|
|
2D search:
|
|
name : ~
|
|
xmin : 25mm
|
|
xmax : 126mm
|
|
xspeed : 10mm/s
|
|
ymin : 0mm
|
|
ymax : 0mm
|
|
yspeed : 10mm/s
|
|
zpos : 5mm
|
|
followmidline: true
|
|
npasses : 1
|
|
pause : 1000ms
|
|
Stimulation:
|
|
deltaf : 20Hz
|
|
amplitude: 40mV
|
|
Analysis:
|
|
nfft : 1024
|
|
nshift : 128
|
|
kernelwidth: 0.001ms
|
|
Robot setup:
|
|
robotdev : robot-2
|
|
xmapping : [ y, z, x ]
|
|
xinvert : true
|
|
ymapping : [ z, x, y ]
|
|
yinvert : true
|
|
zmapping : [ x, y, z ]
|
|
zinvert : false
|
|
safex : 350mm
|
|
safey : 0mm
|
|
safez : 0mm
|
|
taxispeed: 40mm/s
|
|
|
|
*RePro: RobotToFishPosition
|
|
Position:
|
|
destination : [ 0mm, 0mm, 0mm ]
|
|
followmidline: true
|
|
Robot setup:
|
|
xmapping: [ y, z, x ]
|
|
xinvert : true
|
|
ymapping: [ z, x, y ]
|
|
yinvert : true
|
|
zmapping: [ x, y, z ]
|
|
zinvert : false
|
|
|
|
*RePro: SAM
|
|
General:
|
|
name: ~
|
|
Stimulus:
|
|
duration : 1000ms
|
|
pause : 1000ms
|
|
freqsel : [ relative to EOD, absolute ]
|
|
deltaf : 20Hz
|
|
contrast : 20%
|
|
repeats : 6
|
|
am : true
|
|
sinewave : true
|
|
ampl : "0.0"
|
|
phase : "0.0"pi
|
|
contrastsel: [ fundamental, peak amplitude ]
|
|
Analysis:
|
|
skip : 0.5Periods
|
|
ratebins: 10
|
|
before : 0ms
|
|
after : 0ms
|
|
adjust : false
|
|
|
|
*Attenuator-0
|
|
plugin : LinearAttenuate
|
|
ident : Attenuator-0
|
|
device : attdev-1
|
|
line : 0
|
|
aodevice : ao-1
|
|
aochannel : 0
|
|
intensityname : amplitude
|
|
intensityunit : mV/cm
|
|
intensityformat: %6.3f
|
|
frequencyname : ~
|
|
frequencyunit : Hz
|
|
frequencyformat: %7.0f
|
|
gain : 0.19395
|
|
offset : 0
|
|
|
|
*Attenuator-1
|
|
plugin : LinearAttenuate
|
|
ident : Attenuator-1
|
|
device : attdev-1
|
|
line : 1
|
|
aodevice : ao-1
|
|
aochannel : 1
|
|
intensityname : amplitude
|
|
intensityunit : mV/cm
|
|
intensityformat: %6.3f
|
|
frequencyname : ~
|
|
frequencyunit : Hz
|
|
frequencyformat: %7.0f
|
|
gain : 0.050541
|
|
offset : 0
|
|
|