[receptive fields] add configurations
This commit is contained in:
parent
6c013d90cd
commit
fc135147d8
10
.gitignore
vendored
10
.gitignore
vendored
@ -1,6 +1,6 @@
|
||||
20*
|
||||
*.cfg~
|
||||
*.log
|
||||
relacsdebug*
|
||||
bugs
|
||||
coredumps
|
||||
*/*.cfg~
|
||||
*/*.log
|
||||
*/relacsdebug*
|
||||
*/bugs
|
||||
*/coredumps
|
||||
35
rfs/macrorfs.cfg
Normal file
35
rfs/macrorfs.cfg
Normal file
@ -0,0 +1,35 @@
|
||||
$Baseline
|
||||
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||
|
||||
$Calibrate Robot
|
||||
CalibrateRobot:
|
||||
|
||||
$Receptive Field low
|
||||
ReceptiveField: amplitude=10mV, repeats=4
|
||||
|
||||
$Receptive Field mid
|
||||
ReceptiveField: amplitude=20mV, repeats=4
|
||||
|
||||
$Receptive Field high
|
||||
ReceptiveField: amplitude=40mV, repeats=4
|
||||
|
||||
$Robot to fish position
|
||||
RobotToFishPosition:
|
||||
|
||||
$FICurve AM
|
||||
FICurve: am=true;
|
||||
|
||||
$Noise AM: contrast=10%
|
||||
Pause: duration=200ms
|
||||
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=10%; repeats=5
|
||||
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=5%; repeats=5
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=20%
|
||||
|
||||
$Back
|
||||
switch macros.cfg
|
||||
|
||||
|
||||
#$SAMs AM
|
||||
#SAM: deltaf=(100..300..10,alternateout,r=3)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
#SAM: deltaf=(20..90..10,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
#SAM: deltaf=(2..18..2,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
51
rfs/macros.cfg
Normal file
51
rfs/macros.cfg
Normal file
@ -0,0 +1,51 @@
|
||||
$START startup nobutton keep
|
||||
shell rm -f $RELACSDEFAULTPATH/*
|
||||
|
||||
$DISKSPACE stopsession nobutton keep
|
||||
message Diskspace: $(DS=$(df -B 1M . | tail -n 1 | awk '{ print $4 }');
|
||||
[ $DS -lt 1000 ] && echo "<h1>! Warning !</h1> <h2>Less than <b>${DS}MB</b>
|
||||
of free disk space left!
|
||||
</h2> Please make backups and clean up to make room for the next recording!")
|
||||
|
||||
|
||||
#############################################################################
|
||||
$Search fallback keep
|
||||
BaselineActivity: repeats=0; isimax=20ms; isistep=0.2ms; auto=always;
|
||||
SAM: deltaf=20; contrast=20; duration=400ms; pause=100ms; repeats=0; am=true; freqsel=relative to EOD; sinewave=true;
|
||||
SAM: deltaf=20; contrast=20; duration=400ms; pause=100ms; repeats=0; am=false; freqsel=absolute; sinewave=true;
|
||||
|
||||
|
||||
#############################################################################
|
||||
$Start startsession keep overwrite
|
||||
Pause: duration=0.2s;
|
||||
detector: autoconfigure 0.2
|
||||
macro Baseline
|
||||
detector Spikes-1: save
|
||||
|
||||
$Baseline
|
||||
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||
|
||||
|
||||
#############################################################################
|
||||
$AM
|
||||
switch macrosam.cfg
|
||||
|
||||
$Receptive fields
|
||||
switch macrorfs.cfg
|
||||
|
||||
|
||||
#############################################################################
|
||||
$Calib direct
|
||||
CalibEField: am=0;
|
||||
|
||||
$Calib AM
|
||||
CalibEField: am=1;
|
||||
|
||||
$Check SAM
|
||||
SAM: am=false; freqsel=relative to EOD; repeats=0; contrast=20%; deltaf=20Hz;
|
||||
|
||||
|
||||
#############################################################################
|
||||
|
||||
$Idle
|
||||
Pause: duration=0;
|
||||
38
rfs/macrosam.cfg
Normal file
38
rfs/macrosam.cfg
Normal file
@ -0,0 +1,38 @@
|
||||
#############################################################################
|
||||
$Baseline
|
||||
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||
|
||||
$SAMs AM
|
||||
SAM: deltaf=(100..300..10,alternateout,r=3)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: deltaf=(20..90..10,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: deltaf=(2..18..2,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$Chirps EOD
|
||||
#Chirps: chirpsize=100Hz; deltaf=(-250,-240,-230,-220,-210,-200,-190,-180,-170,-160,-150,-140,-130,-120,-110,-100,-90,-80,-70,-60,-50,-40,-30,-20,-10,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,210,220,230,240,250); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||
Chirps: chirpsize=60Hz; deltaf=(-250,-200,-150,-100,-80,-60,-40,-20,-10,10,20,40,60,80,100,150,200,250); contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||
|
||||
$Nervetest
|
||||
Chirps: chirpsize=100Hz; deltaf=(20); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||
|
||||
$FICurve AM
|
||||
FICurve: am=true;
|
||||
|
||||
$Noise AM: contrast=10%
|
||||
Pause: duration=200ms
|
||||
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=10%
|
||||
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=5%
|
||||
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=20%
|
||||
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn200Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn100Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn50Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn25Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||
|
||||
|
||||
#############################################################################
|
||||
$DC
|
||||
switch macrosdc.cfg
|
||||
|
||||
$Back
|
||||
switch macros.cfg
|
||||
69
rfs/macrosdc.cfg
Normal file
69
rfs/macrosdc.cfg
Normal file
@ -0,0 +1,69 @@
|
||||
#############################################################################
|
||||
$Baseline
|
||||
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||
|
||||
$SAMs 60Hz
|
||||
SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01, 0.005)%; deltaf=60Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=5;
|
||||
|
||||
$SAMs 250Hz
|
||||
SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01, 0.005)%; deltaf=250Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=5;
|
||||
|
||||
$SAMs 40%
|
||||
SAM: contrast=40%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=40%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=40%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$SAMs 20%
|
||||
SAM: contrast=20%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=20%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=20%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$SAMs 10%
|
||||
SAM: contrast=10%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=10%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=10%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$SAMs 5%
|
||||
SAM: contrast=5%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=5%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=5%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$SAMs 1%
|
||||
SAM: contrast=1%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=1%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$SAMs 0.1%
|
||||
SAM: contrast=0.1%; deltaf=(100..500..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||
SAM: contrast=0.1%; deltaf=(20..90..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||
SAM: contrast=0.1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||
|
||||
$Chirps A
|
||||
Chirps: chirpsize=120Hz; deltaf=60Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01, 0.005)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=250Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01, 0.005)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
|
||||
$Chirps f
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=0.5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=0.1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=0.05%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500)Hz; contrast=0.01%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
|
||||
|
||||
#$FICurve DC
|
||||
#FICurve: am=false;
|
||||
|
||||
#$Noise DC
|
||||
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=10%
|
||||
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=5%
|
||||
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=20%
|
||||
|
||||
|
||||
#############################################################################
|
||||
$AM
|
||||
switch macrosam.cfg
|
||||
|
||||
$Back
|
||||
switch macros.cfg
|
||||
BIN
rfs/mirob2.t.zip
Normal file
BIN
rfs/mirob2.t.zip
Normal file
Binary file not shown.
236
rfs/relacs.cfg
Normal file
236
rfs/relacs.cfg
Normal file
@ -0,0 +1,236 @@
|
||||
*Settings
|
||||
Plugins:
|
||||
pluginpathes : [ base*, calibration*, misc*, ephys*, efield*, efish*, comedi*, attcs3310* ]
|
||||
pluginhelppathes: ~
|
||||
controlplugin : [ Session, Robot, AmplifierControl, SpectrumAnalyzer ]
|
||||
modelplugin : PUnitModel
|
||||
Pathes:
|
||||
pathformat : %04Y-%02m-%02d-%a2a
|
||||
defaultpath: dry/
|
||||
repropath : [ stimuli/repros/, reprodata, stimuli/repros/ ]
|
||||
infofile : info.dat
|
||||
Save:
|
||||
saverelacsfiles : true
|
||||
saveodmlfiles : false
|
||||
savenixfiles : true
|
||||
saverelacscore : true
|
||||
saverelacsplugins: true
|
||||
saverelacslog : true
|
||||
saveattenuators : true
|
||||
Date/time formats:
|
||||
elapsedformat : "%02H:%02M"
|
||||
sessiontimeformat: %Hh%02Mmin%02Ssec
|
||||
reprotimeformat : %Mmin%02Ssec
|
||||
Plotting:
|
||||
printcommand: ~
|
||||
Data acquisition:
|
||||
readinterval : 10ms
|
||||
processinterval: 50ms
|
||||
aitimeout : 10seconds
|
||||
|
||||
*Metadata
|
||||
-Setup-:
|
||||
Identifier (Name): invivo1
|
||||
Maintainer : Jan Grewe
|
||||
Creator : Jan Grewe and Jan Benda
|
||||
Location (Room) : "5A17"
|
||||
Lab : Neuroethology Lab
|
||||
Institute : Institute for Neurobiology
|
||||
University : University Tuebingen
|
||||
Address : Auf der Morgenstelle 28
|
||||
|
||||
*RELACS
|
||||
input data:
|
||||
inputsamplerate : 20kHz
|
||||
inputtracecapacity : 600s
|
||||
inputunipolar : false
|
||||
inputtraceid : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
inputtracescale : [ 100, 1, 10, 10, 100 ]
|
||||
inputtraceunit : [ mV, mV, mV, mV, mV ]
|
||||
inputtracedevice : [ ai-1, ai-1, ai-1, ai-1, ai-1 ]
|
||||
inputtracechannel : [ 8, 0, 2, 4, 6 ]
|
||||
inputtracereference: [ ground, ground, ground, ground, ground ]
|
||||
inputtracemaxvalue : [ 200, 5, 3, 10, 10 ]
|
||||
inputtracecenter : [ true, false, false, false, false ]
|
||||
output data:
|
||||
outputtraceid : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
outputtracedevice : [ ao-1, ao-1, ao-1, ao-1 ]
|
||||
outputtracechannel : [ 1, 0, 2, 3 ]
|
||||
outputtracescale : [ 1, 1, 1, 1 ]
|
||||
outputtraceunit : [ V, V, V, V ]
|
||||
outputtracemaxrate : [ 1kHz, 1kHz, 1kHz, 1kHz ]
|
||||
outputtracemodality: [ electric, electric, electric, current ]
|
||||
|
||||
*Macros
|
||||
file : [ macrorfs.cfg, macros.cfg, macrosam.cfg, macrosdc.cfg ]
|
||||
mainfile : macros.cfg
|
||||
fallbackonreload: true
|
||||
|
||||
*FilterDetectors
|
||||
Filter1:
|
||||
name : Spikes-1
|
||||
filter : DynamicSUSpikeDetector
|
||||
inputtrace : V-1
|
||||
save : true
|
||||
savemeanquality: true
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
Filter2:
|
||||
name : EOD
|
||||
filter : EODDetector
|
||||
inputtrace : EOD
|
||||
save : true
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
trigger : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
Filter3:
|
||||
name : Chirps
|
||||
filter : ChirpDetector
|
||||
inputtrace : EOD
|
||||
save : true
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : true
|
||||
Filter4:
|
||||
name : LocalEOD-1
|
||||
filter : EODDetector
|
||||
inputtrace : LocalEOD-1
|
||||
save : false
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
Filter5:
|
||||
name : LocalBeat-1
|
||||
filter : BeatDetector
|
||||
inputtrace : LocalEOD-1
|
||||
save : true
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
othertrace : Chirps
|
||||
Filter6:
|
||||
name : LocalEOD-2
|
||||
filter : EODDetector
|
||||
inputtrace : LocalEOD-2
|
||||
save : false
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
Filter7:
|
||||
name : GlobalEFieldStimulus
|
||||
filter : EODDetector
|
||||
inputtrace : GlobalEFieldStimulus
|
||||
save : false
|
||||
savemeanquality: false
|
||||
plot : true
|
||||
buffersize : 300000
|
||||
storesize : true
|
||||
storewidth : false
|
||||
|
||||
*AudioMonitor
|
||||
device : [ "-1 default", "0 HDA Intel PCH: CX20642 Analog (hw:0,0) (2 channels)", "2 HDA Intel PCH: HDMI 0 (hw:0,3) (8 channels)", "3 HDA Intel PCH: HDMI 1 (hw:0,7) (8 channels)", "4 sysdefault (128 channels)", "5 front (2 channels)", "6 surround40 (2 channels)", "7 surround51 (2 channels)", "8 surround71 (2 channels)", "9 hdmi (8 channels)", "10 pulse (32 channels)", "11 dmix (2 channels)", "12 default (32 channels) - default" ]
|
||||
enable : true
|
||||
mute : false
|
||||
gain : 1
|
||||
audiorate: [ "44.1", "8", "16", "22.05", "44.1", "48", "96" ]kHz
|
||||
|
||||
*Devices
|
||||
Device1:
|
||||
plugin : AmplMode
|
||||
device : dio-1
|
||||
ident : ampl-1
|
||||
buzzerpin : 14
|
||||
resistancepin: 15
|
||||
bridgepin : -1
|
||||
cclamppin : -1
|
||||
vclamppin : -1
|
||||
dclamppin : -1
|
||||
buzzerpulse : 500
|
||||
Device2:
|
||||
plugin: [ Mirob, Mirob ]
|
||||
device: dev
|
||||
ident : robot-1
|
||||
Device3:
|
||||
plugin: [ XYZRobot, XYZRobot ]
|
||||
device: robot-1
|
||||
ident : robot-2
|
||||
|
||||
*Analog Input Devices
|
||||
Device1:
|
||||
plugin: ComediAnalogInput
|
||||
device: /dev/comedi0
|
||||
ident : ai-1
|
||||
|
||||
*Analog Output Devices
|
||||
Device1:
|
||||
plugin: ComediAnalogOutput
|
||||
device: /dev/comedi0
|
||||
ident : ao-1
|
||||
|
||||
*Digital I/O Devices
|
||||
Device1:
|
||||
plugin: ComediDigitalIO
|
||||
device: /dev/comedi0
|
||||
ident : dio-1
|
||||
|
||||
*Attenuator Devices
|
||||
Device1:
|
||||
plugin: [ CS3310DIO, AttSim ]
|
||||
device: dio-1
|
||||
ident : attdev-1
|
||||
Device2:
|
||||
plugin : [ CS3310DIO, AttSim ]
|
||||
device : dio-1
|
||||
ident : attdev-2
|
||||
cspin : 9
|
||||
mutepin : 10
|
||||
zcenpin : 11
|
||||
dataoutpin: 8
|
||||
datainpin : 12
|
||||
strobepin : 13
|
||||
|
||||
*Attenuator Interfaces
|
||||
Device1:
|
||||
plugin : LinearAttenuate
|
||||
device : attdev-1
|
||||
line : 0
|
||||
aodevice : ao-1
|
||||
aochannel : 0
|
||||
ident : Attenuator-0
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
Device2:
|
||||
plugin : LinearAttenuate
|
||||
device : attdev-1
|
||||
line : 1
|
||||
aodevice : ao-1
|
||||
aochannel : 1
|
||||
ident : Attenuator-1
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
Device3:
|
||||
plugin : LinearAttenuate
|
||||
device : attdev-2
|
||||
line : 0
|
||||
aodevice : ao-1
|
||||
aochannel : 2
|
||||
ident : Attenuator-2
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
|
||||
752
rfs/relacsplugins.cfg
Normal file
752
rfs/relacsplugins.cfg
Normal file
@ -0,0 +1,752 @@
|
||||
*Metadata
|
||||
Recording:
|
||||
Recording quality: [ Fair, ~, good, poor, Poor, Fair, Good ]
|
||||
Comment : "RF acoustically at 27, noise AM with LOCAL EOD, use 2nd baseline repro for baseline activity!"
|
||||
Experimenter : [ Tim Hladnik, Tim Hladnik, MZ/TH, Martin Zeller, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
|
||||
WaterTemperature : 23.8°C
|
||||
WaterConductivity: 330uS/cm
|
||||
Cell:
|
||||
CellType (Cell type) : [ P-unit, E-cell, E-cell deep, unknow, E-Cell, unkown, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
|
||||
Structure (Recording location): [ Nerve, Nerve, Brain ]
|
||||
BrainRegion : [ n.A., Torus, n.A., ELL ]
|
||||
BrainSubRegion : [ ~, ~, LS, CLS, CMS, MS ]
|
||||
Depth : 0um
|
||||
Lateral position : 0mm
|
||||
Transverse section : 0
|
||||
Subject:
|
||||
Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
|
||||
Gender (Sex): [ unknown, unknown, Male, Female ]
|
||||
Size : 13cm
|
||||
Weight : 5.1g
|
||||
Identifier : "2018lepto28"
|
||||
-Preparation-:
|
||||
Type : [ in vivo, in vivo, slice ]
|
||||
Anaesthesia : true
|
||||
Anaesthetic (Drug) : MS 222
|
||||
AnaestheticDose (Concentration): 100mg/l
|
||||
LocalAnaesthesia : true
|
||||
LocalAnaesthetic (Drug) : Lidocaine
|
||||
Immobilization : true
|
||||
ImmobilizationDrug (Drug) : Tubocurarin 5mg/L
|
||||
ImmobilizationDose : 70ul
|
||||
|
||||
*Control: Session
|
||||
ephys: true
|
||||
|
||||
*Control: Robot
|
||||
General:
|
||||
robot: robot-2
|
||||
Stored positions:
|
||||
FishHeadPosition : "(362.162,407.166,223.354)"
|
||||
FishTailPosition : "(362.162,277.865,250.954)"
|
||||
MovementAreaStart : "(0,0,0)"
|
||||
MovementAreaEnd : "(0,0,0)"
|
||||
ForbiddenAreaStart: "(0.499,93.490,0.196)"
|
||||
ForbiddenAreaEnd : "(340.000,447.802,253.921)"
|
||||
CustomPosition : "(400.0,0.1,0.1)"
|
||||
Tool clamp:
|
||||
toolreleasedelay: 1s
|
||||
toolfixdelay : 2.5s
|
||||
autoclamp : true
|
||||
|
||||
*Control: AmplifierControl
|
||||
initmode : [ Bridge, Current-clamp, Dynamic-clamp, Voltage-clamp, Manual selection ]
|
||||
resistancecurrent: 1nA
|
||||
adjust : false
|
||||
maxresistance : 100MOhm
|
||||
buzzpulse : 500ms
|
||||
showbridge : true
|
||||
showcc : false
|
||||
showdc : false
|
||||
showvc : false
|
||||
showmanual : false
|
||||
syncpulse : 10us
|
||||
syncmode : 0samples
|
||||
|
||||
*Control: SpectrumAnalyzer
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
origin : [ before end of data, before signal, after signal ]
|
||||
offset : 0ms
|
||||
duration : 1000ms
|
||||
resolution: 10Hz
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
fmax : 500Hz
|
||||
decibel : true
|
||||
pmin : -50dB
|
||||
|
||||
*Model: PUnitModel
|
||||
General:
|
||||
EOD:
|
||||
eodtype : [ Apteronotus, None, Sine, Apteronotus, Eigenmannia ]
|
||||
eodfreq : 800Hz
|
||||
eodfreqsd : 10Hz
|
||||
eodfreqtau : 10000s
|
||||
eodlocalamplitude : 1mV/cm
|
||||
eodglobalamplitude: 1mV/cm
|
||||
localstimulusgain : 5.00
|
||||
globalstimulusgain: 0.00
|
||||
stimulusgain : 1.00
|
||||
Spikes:
|
||||
voltagescale: 0.5
|
||||
Spike generator:
|
||||
spikemodel: [ Wang-Buzsaki, Stimulus, Passive membrane, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
|
||||
noised : 0.1
|
||||
deltat : 0.05ms
|
||||
integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
|
||||
Voltage-gated current 1 - activation only:
|
||||
gmc : 2
|
||||
emc : -90mV
|
||||
mvmc : -35mV
|
||||
mwmc : 10mV
|
||||
taumc: 30ms
|
||||
Voltage-gated current 2 - activation and inactivation:
|
||||
gmhc : 0
|
||||
emhc : -90mV
|
||||
mvmhc : -40mV
|
||||
mwmhc : 10mV
|
||||
taummhc: 10ms
|
||||
pmmhc : 1
|
||||
hvmhc : -40mV
|
||||
hwmhc : 10mV
|
||||
tauhmhc: 10ms
|
||||
pmhhc : 1
|
||||
|
||||
*Model: Stimulus
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Model: Passive membrane
|
||||
Parameter:
|
||||
R: 50MOhm
|
||||
C: 25pF
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Model: Morris-Lecar
|
||||
General:
|
||||
params: [ Custom, Type I, Type II ]
|
||||
Calcium current:
|
||||
gca : 4nS
|
||||
eca : 120mV
|
||||
mvca: -1.2mV
|
||||
mkca: 18mV
|
||||
Potassium current:
|
||||
gk : 8nS
|
||||
ek : -84mV
|
||||
mvk : 12mV
|
||||
mkk : 17.4mV
|
||||
mphik: 0.067kHz
|
||||
Leak current:
|
||||
gl: 2nS
|
||||
el: -60mV
|
||||
c : 20pF
|
||||
Input:
|
||||
timescale: 10
|
||||
gain : 1
|
||||
offset : 0muA/cm^2
|
||||
|
||||
*Model: Hodgkin-Huxley
|
||||
Sodium current:
|
||||
gna: 120mS/cm^2
|
||||
ena: 50mV
|
||||
Potassium current:
|
||||
gk: 36mS/cm^2
|
||||
ek: -77mV
|
||||
Leak current:
|
||||
gl : 0.3mS/cm^2
|
||||
el : -54.4mV
|
||||
c : 1muF/cm^2
|
||||
phi: 1
|
||||
Input:
|
||||
gain : 50
|
||||
offset: 10muA/cm^2
|
||||
|
||||
*Model: Connor
|
||||
Sodium current:
|
||||
gna: 120mS/cm^2
|
||||
ena: 50mV
|
||||
Potassium current:
|
||||
gk: 20mS/cm^2
|
||||
ek: -77mV
|
||||
A current:
|
||||
gka: 47mS/cm^2
|
||||
eka: -80mV
|
||||
Leak current:
|
||||
gl : 0.3mS/cm^2
|
||||
el : -22mV
|
||||
c : 1muF/cm^2
|
||||
phi: 1
|
||||
Input:
|
||||
gain : 50
|
||||
offset: 30muA/cm^2
|
||||
|
||||
*Model: Wang-Buzsaki
|
||||
Sodium current:
|
||||
gna: 35mS/cm^2
|
||||
ena: 55mV
|
||||
Potassium current:
|
||||
gk: 9mS/cm^2
|
||||
ek: -90mV
|
||||
Leak current:
|
||||
gl : 0.1mS/cm^2
|
||||
el : -65mV
|
||||
c : 1muF/cm^2
|
||||
phi: 5
|
||||
Input:
|
||||
gain : 50
|
||||
offset: 6muA/cm^2
|
||||
|
||||
*Event Detector: Spikes-1
|
||||
Detector:
|
||||
minthresh: 23.0mV
|
||||
ratio : 15%
|
||||
testwidth: false
|
||||
fitwidth : 3.00ms
|
||||
|
||||
*Event Detector: EOD
|
||||
threshold : 0.44mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*Event Detector: Chirps
|
||||
minthresh: 10Hz
|
||||
|
||||
*Event Detector: LocalEOD-1
|
||||
threshold : 1mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*Event Detector: LocalBeat-1
|
||||
minthresh: 0.050mV
|
||||
ratio : 35%
|
||||
|
||||
*Event Detector: LocalEOD-2
|
||||
threshold : 1mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*Event Detector: GlobalEFieldStimulus
|
||||
threshold : 0.052837mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*RePro: Pause
|
||||
duration : 0sec
|
||||
savedata : false
|
||||
plotwidth: 0sec
|
||||
|
||||
*RePro: Record
|
||||
duration : 1sec
|
||||
plotwidth: 0sec
|
||||
dioout : false
|
||||
diodevice: dio-1
|
||||
dioline : 0
|
||||
|
||||
*RePro: SaveTraces
|
||||
General:
|
||||
duration : 1sec
|
||||
savedata : false
|
||||
split : false
|
||||
dioout : false
|
||||
diodevice: dio-1
|
||||
dioline : 0
|
||||
Analog input traces:
|
||||
trace-V-1 : true
|
||||
trace-EOD : true
|
||||
trace-LocalEOD-1 : true
|
||||
trace-LocalEOD-2 : true
|
||||
trace-GlobalEFieldStimulus: true
|
||||
Events:
|
||||
events-Spikes-1 : true
|
||||
events-EOD : true
|
||||
events-Chirps : true
|
||||
events-LocalEOD-1 : true
|
||||
events-LocalBeat-1-1 : true
|
||||
events-LocalBeat-1-2 : true
|
||||
events-LocalEOD-2 : true
|
||||
events-GlobalEFieldStimulus: true
|
||||
|
||||
*RePro: SetAttenuatorGain
|
||||
outrace : V-1
|
||||
gain : 1
|
||||
interactive: true
|
||||
|
||||
*RePro: SetInputGain
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
gainindex : 3
|
||||
interactive: true
|
||||
|
||||
*RePro: SetOutput
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
value : 0V
|
||||
intensity : 1
|
||||
interactive: false
|
||||
|
||||
*RePro: Spectrogram
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
width : 100ms
|
||||
step : 0ms
|
||||
tmax : 10s
|
||||
duration: 0s
|
||||
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
powermax: true
|
||||
fmax : 2000Hz
|
||||
pmax : 0dB
|
||||
pmin : -50dB
|
||||
|
||||
*RePro: TransferFunction
|
||||
Stimulus:
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
offsetbase: [ custom, current ]value
|
||||
offset : 0V
|
||||
amplitude : 1V
|
||||
clip : 4
|
||||
intensity : 1
|
||||
fmin : 0Hz
|
||||
fmax : 1000Hz
|
||||
duration : 1s
|
||||
pause : 1s
|
||||
repeats : 100
|
||||
Analysis:
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
plotstdevs : true
|
||||
plotcoherence: true
|
||||
plotdecibel : false
|
||||
|
||||
*RePro: Wait
|
||||
absdate: false
|
||||
date : ~
|
||||
days : 0days
|
||||
time : "00:00:00.000"
|
||||
|
||||
*RePro: AttenuatorCheck
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
duration : 1s
|
||||
type : [ attenuation, noise ]
|
||||
frequency: 50Hz
|
||||
amplitude: 1Vmax
|
||||
minlevel : 0dB
|
||||
maxlevel : 100dB
|
||||
dlevel : 1dB
|
||||
adjust : true
|
||||
|
||||
*RePro: InputRangeCheck
|
||||
outtrace: [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
duration: 1000ms
|
||||
pause : 1000ms
|
||||
amplnum : 10
|
||||
|
||||
*RePro: RestartDelay
|
||||
duration: 100ms
|
||||
repeats : 100
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
|
||||
*RePro: StimulusDelay
|
||||
intrace : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||
samplerate: 10kHz
|
||||
duration : 10ms
|
||||
pause : 50ms
|
||||
repeats : 100
|
||||
setdelay : [ none, minimum, mean ]
|
||||
|
||||
*RePro: BridgeTest
|
||||
amplitude : 1V
|
||||
duration : 10ms
|
||||
pause : 100ms
|
||||
average : 10
|
||||
skipspikes : true
|
||||
dynamicrange: false
|
||||
rate : 0.01
|
||||
plottrace : true
|
||||
|
||||
*RePro: CalibrateSyncPulse
|
||||
imin : -1
|
||||
imax : 1
|
||||
istep : 0.001
|
||||
skipwin : 1000ms
|
||||
duration: 1000ms
|
||||
|
||||
*RePro: CapacityCompensation
|
||||
amplitude : 1V
|
||||
duration : 200ms
|
||||
frequency : 100Hz
|
||||
showcycles : 10
|
||||
pause : 100ms
|
||||
average : 10
|
||||
skipspikes : true
|
||||
dynamicrange: false
|
||||
rate : 0.01
|
||||
|
||||
*RePro: Iontophoresis
|
||||
durationpos : 1s
|
||||
amplitudepos : 1V
|
||||
pausepos : 1s
|
||||
durationneg : 1s
|
||||
amplitudeneg : 1V
|
||||
pauseneg : 1s
|
||||
fortunes : true
|
||||
fortuneperiod: 10s
|
||||
|
||||
*RePro: SetLeak
|
||||
interactive : true
|
||||
preset : [ previous, zero, custom ]values
|
||||
g : 0nS
|
||||
E : 0mV
|
||||
reversaltorest: true
|
||||
involtage : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
duration : 100ms
|
||||
|
||||
*RePro: SetVGate
|
||||
interactive : true
|
||||
preset : [ previous, zero, custom ]values
|
||||
g : 0nS
|
||||
E : 0mV
|
||||
vmid : 0mV
|
||||
width : 0mV
|
||||
tau : 10ms
|
||||
reversaltorest: true
|
||||
involtage : [ V-1, EOD, LocalEOD-1, LocalEOD-2, GlobalEFieldStimulus ]
|
||||
duration : 100ms
|
||||
|
||||
*RePro: Beats
|
||||
Stimulation:
|
||||
duration : 10seconds
|
||||
pause : 20seconds
|
||||
ramp : 0.5seconds
|
||||
deltafrange : "10"Hz
|
||||
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
fixeddf : false
|
||||
amplitude : 1mV/cm
|
||||
amtype : [ none, sine, rectangular ]
|
||||
amfreq : "1"Hz
|
||||
amamplitude : "100"%
|
||||
repeats : 10
|
||||
fakefish : 0Hz
|
||||
Chirps:
|
||||
generatechirps : false
|
||||
chirpsize : 100Hz
|
||||
chirpwidth : 100ms
|
||||
chirpampl : 0%
|
||||
chirpkurtosis : 1
|
||||
chirpfrequencies: ~Hz
|
||||
chirptimesfile : ~
|
||||
chirptimeshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
Analysis:
|
||||
before : 1seconds
|
||||
after : 1seconds
|
||||
averagetime : 1seconds
|
||||
usepsd : true
|
||||
mineodfreq : 100Hz
|
||||
maxeodfreq : 2000Hz
|
||||
eodfreqprec : 1Hz
|
||||
neod : 2
|
||||
showstimulus: false
|
||||
split : false
|
||||
savetraces : false
|
||||
|
||||
*RePro: CalibEField
|
||||
General:
|
||||
reset : true
|
||||
resetval : 0.1
|
||||
am : false
|
||||
beatfreq : 10Hz
|
||||
frequency: 670Hz
|
||||
duration : 600ms
|
||||
pause : 10ms
|
||||
Range:
|
||||
amplsel : [ contrast, amplitude ]
|
||||
targetcontrast : 25%
|
||||
mincontrast : 25%
|
||||
maxcontrast : 65%
|
||||
targetamplitude: 1mV/cm
|
||||
minamplitude : 0.5mV/cm
|
||||
maxamplitude : 2mV/cm
|
||||
numintensities : 10
|
||||
|
||||
*RePro: CalibrateRobot
|
||||
robot: robot-2
|
||||
|
||||
*RePro: EFieldGeometry
|
||||
Enviroment data:
|
||||
temperature : 26°C
|
||||
conductivity: 330µS
|
||||
water_level : 20cm
|
||||
Measurement data:
|
||||
robot : robot-2
|
||||
type : ~
|
||||
distance : 0mm
|
||||
head_length : 20mm
|
||||
tail_length : 20mm
|
||||
width_posY : 50mm
|
||||
width_negY : 50mm
|
||||
height : 50mm
|
||||
depth : 50mm
|
||||
step_length_x: 5mm
|
||||
step_length_y: 5mm
|
||||
step_length_z: 5mm
|
||||
|
||||
*RePro: JAR
|
||||
Stimulation:
|
||||
duration : 10seconds
|
||||
pause : 10seconds
|
||||
ramp : 0.5seconds
|
||||
deltafstep : 2Hz
|
||||
deltafmax : 12Hz
|
||||
deltafmin : -12Hz
|
||||
deltafrange : ~
|
||||
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
repeats : 200
|
||||
Amplitudes:
|
||||
amplsel : [ contrast, absolute ]
|
||||
contrastmax : 20%
|
||||
contrastmin : 10%
|
||||
contraststep: 20%
|
||||
amplmin : 1mV/cm
|
||||
amplmax : 2mV/cm
|
||||
amplstep : 1mV/cm
|
||||
S&timulus:
|
||||
genstim : true
|
||||
sinewave: true
|
||||
file : ~
|
||||
sigstdev: 1
|
||||
warpfile: false
|
||||
fakefish: 0Hz
|
||||
A&nalysis:
|
||||
before : 1seconds
|
||||
after : 8seconds
|
||||
savetraces : true
|
||||
jaraverage : 500ms
|
||||
chirpaverage: 20ms
|
||||
eodsavetime : 1000ms
|
||||
|
||||
*RePro: LinearField
|
||||
duration: 1s
|
||||
|
||||
*RePro: ManualJAR
|
||||
deltaf : 0.0Hz
|
||||
lineardeltaf : false
|
||||
deltaf2 : 0.0Hz
|
||||
amplitude : 1.0mV
|
||||
duration : 10seconds
|
||||
ramp : 0.5seconds
|
||||
fakefish : 0Hz
|
||||
showlineardeltaf: false
|
||||
before : 1seconds
|
||||
after : 1seconds
|
||||
averagetime : 1seconds
|
||||
split : false
|
||||
savetraces : false
|
||||
|
||||
*RePro: BaselineActivity
|
||||
Timing:
|
||||
duration: 300ms
|
||||
repeats : 0
|
||||
Analysis:
|
||||
isimax : 20ms
|
||||
isistep : 0.2ms
|
||||
ratedt : 0.05ms
|
||||
ratetmax: 2ms
|
||||
Files:
|
||||
eodduration : 2000ms
|
||||
saveeodtrace: false
|
||||
saveeodtimes: false
|
||||
Control:
|
||||
auto : [ never, once, always ]
|
||||
adjust: false
|
||||
|
||||
*RePro: Chirps
|
||||
Chirp parameter:
|
||||
nchirps : 10
|
||||
beatpos : 10
|
||||
beatstart : 0.25
|
||||
minspace : 200ms
|
||||
firstspace : 200ms
|
||||
chirpsize : 100Hz
|
||||
chirpwidth : 14ms
|
||||
chirpampl : 2%
|
||||
chirpsel : [ generated, from file ]
|
||||
chirpkurtosis: 1
|
||||
file : ~
|
||||
Beat parameter:
|
||||
deltaf : 10Hz
|
||||
contrast: 20%
|
||||
am : false
|
||||
sinewave: true
|
||||
playback: false
|
||||
pause : 1000ms
|
||||
repeats : 6
|
||||
Analysis:
|
||||
sigma : 2ms
|
||||
adjust: true
|
||||
|
||||
*RePro: FICurve
|
||||
Test-Intensities:
|
||||
duration : 400ms
|
||||
maxintfac : 180%
|
||||
minintfac : 20%
|
||||
nints : 16
|
||||
repeats : 1
|
||||
blockrepeats : 10
|
||||
singlerepeats: 1
|
||||
intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
intincrement : -2
|
||||
Pre-Intensities:
|
||||
preduration : 0ms
|
||||
maxpreintfac : 140%
|
||||
minpreintfac : 60%
|
||||
npreints : 2
|
||||
preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
Control:
|
||||
am : true
|
||||
pause : 1000ms
|
||||
delay : 200ms
|
||||
onsettime : 50ms
|
||||
rangeintincrement: 4
|
||||
minrate : 40Hz
|
||||
minratefrac : 15%
|
||||
adjust : false
|
||||
|
||||
*RePro: FileStimulus
|
||||
Stimulus:
|
||||
file : /home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat
|
||||
sigstdev : 0.3
|
||||
duration : 0ms
|
||||
pause : 1000ms
|
||||
amplsel : [ contrast, absolute ]
|
||||
contrast : 20%
|
||||
amplitude: 1mV/cm
|
||||
am : true
|
||||
repeats : 10
|
||||
Additional noise:
|
||||
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
|
||||
uppercutoff : 300Hz
|
||||
lowercutoff : 0Hz
|
||||
noisetau : 100ms
|
||||
noisecontrast: 5%
|
||||
noiseampl : 80mV/cm
|
||||
Analysis:
|
||||
binwidth: 5ms
|
||||
before : 0ms
|
||||
after : 0ms
|
||||
plotpsd : false
|
||||
psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
adjust : false
|
||||
|
||||
*RePro: ReceptiveField
|
||||
Quick Search:
|
||||
xmin : 27mm
|
||||
xmax : 128mm
|
||||
xstep : 5mm
|
||||
ymin : 0mm
|
||||
ymax : 0mm
|
||||
ystep : 1mm
|
||||
ystart : 0mm
|
||||
zmin : -20mm
|
||||
zmax : -20mm
|
||||
zstep : 1mm
|
||||
followmidline: true
|
||||
Stimulation:
|
||||
deltaf : 20Hz
|
||||
amplitude: 10mV
|
||||
duration : 1000ms
|
||||
pause : 250ms
|
||||
repeats : 4
|
||||
binwidth : 20ms
|
||||
Robot setup:
|
||||
xmapping: [ y, z, x ]
|
||||
xinvert : true
|
||||
ymapping: [ z, x, y ]
|
||||
yinvert : true
|
||||
zmapping: [ x, y, z ]
|
||||
zinvert : false
|
||||
safex : 410mm
|
||||
safey : 315mm
|
||||
safez : 205mm
|
||||
|
||||
*RePro: RobotToFishPosition
|
||||
Position:
|
||||
destination : "(27,0,-20)"
|
||||
followmidline: true
|
||||
Robot setup:
|
||||
xmapping: [ y, z, x ]
|
||||
xinvert : true
|
||||
ymapping: [ z, x, y ]
|
||||
yinvert : true
|
||||
zmapping: [ x, y, z ]
|
||||
zinvert : false
|
||||
|
||||
*RePro: SAM
|
||||
Stimulus:
|
||||
duration : 1000ms
|
||||
pause : 1000ms
|
||||
freqsel : [ relative to EOD, absolute ]
|
||||
deltaf : 20Hz
|
||||
contrast : 20%
|
||||
repeats : 6
|
||||
am : true
|
||||
sinewave : true
|
||||
ampl : "0.0"
|
||||
phase : "0.0"pi
|
||||
contrastsel: [ fundamental, peak amplitude ]
|
||||
Analysis:
|
||||
skip : 0.5Periods
|
||||
ratebins: 10
|
||||
before : 0ms
|
||||
after : 0ms
|
||||
adjust : false
|
||||
|
||||
*Attenuator-0
|
||||
plugin : LinearAttenuate
|
||||
ident : Attenuator-0
|
||||
device : attdev-1
|
||||
line : 0
|
||||
aodevice : ao-1
|
||||
aochannel : 0
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
frequencyname : ~
|
||||
frequencyunit : Hz
|
||||
frequencyformat: %7.0f
|
||||
gain : 0.43737
|
||||
offset : 0
|
||||
|
||||
*Attenuator-1
|
||||
plugin : LinearAttenuate
|
||||
ident : Attenuator-1
|
||||
device : attdev-1
|
||||
line : 1
|
||||
aodevice : ao-1
|
||||
aochannel : 1
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
frequencyname : ~
|
||||
frequencyunit : Hz
|
||||
frequencyformat: %7.0f
|
||||
gain : 0.045983
|
||||
offset : 0
|
||||
|
||||
*Attenuator-2
|
||||
plugin : LinearAttenuate
|
||||
ident : Attenuator-2
|
||||
device : attdev-2
|
||||
line : 0
|
||||
aodevice : ao-1
|
||||
aochannel : 2
|
||||
intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
frequencyname : ~
|
||||
frequencyunit : Hz
|
||||
frequencyformat: %7.0f
|
||||
gain : 1
|
||||
offset : 0
|
||||
|
||||
Loading…
Reference in New Issue
Block a user