[moving objects] add configurations
This commit is contained in:
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186cd1461a
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16
moving_objects/macro_grating.cfg
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16
moving_objects/macro_grating.cfg
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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$Moving Grating - small
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MovingObjects: distmin=0; distmax=0; diststep=10; object="small comb"
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$Moving Grating - medium
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MovingObjects: distmin=0; distmax=0; diststep=10; object="medium comb"
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$Moving Grating - large
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MovingObjects: distmin=0; distmax=0; diststep=10; object="large comb"
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$Back
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switch macrorfs.cfg
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14
moving_objects/macro_object.cfg
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14
moving_objects/macro_object.cfg
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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$Moving Object - small
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MovingObjects: distmin=0; distmax=0; diststep=10; object="small object"
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$Moving Object - medium
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MovingObjects: distmin=0; distmax=0; diststep=10; object="medium object"
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$Back
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switch macrorfs.cfg
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41
moving_objects/macrorfs.cfg
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41
moving_objects/macrorfs.cfg
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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$Calibrate Robot
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CalibrateRobot:
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#$Receptive Field low
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#ReceptiveField: amplitude=10mV, repeats=4
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#$Receptive Field mid
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#ReceptiveField: amplitude=20mV, repeats=4
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#$Receptive Field high
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#ReceptiveField: amplitude=40mV, repeats=4
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$Robot to fish position
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RobotToFishPosition:
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$Moving Grating
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switch macro_grating.cfg
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$Moving Object
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switch macro_object.cfg
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$FICurve AM
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FICurve: am=true;
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$Noise AM: contrast=10%
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Pause: duration=200ms
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FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=10%; repeats=5
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FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=5%; repeats=5
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=20%
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$Back
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switch macros.cfg
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#$SAMs AM
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#SAM: deltaf=(100..300..10,alternateout,r=3)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=2;
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#SAM: deltaf=(20..90..10,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=4;
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#SAM: deltaf=(2..18..2,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=2s; repeats=4;
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57
moving_objects/macros.cfg
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57
moving_objects/macros.cfg
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$START startup nobutton keep
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shell rm -f $RELACSDEFAULTPATH/*
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$DISKSPACE stopsession nobutton keep
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message Diskspace: $(DS=$(df -B 1M . | tail -n 1 | awk '{ print $4 }');
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[ $DS -lt 1000 ] && echo "<h1>! Warning !</h1> <h2>Less than <b>${DS}MB</b>
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of free disk space left!
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</h2> Please make backups and clean up to make room for the next recording!")
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#############################################################################
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$Search fallback keep
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BaselineActivity: repeats=0; isimax=20ms; isistep=0.2ms; auto=always;
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SAM: deltaf=20; contrast=20; duration=400ms; pause=100ms; repeats=0; am=true; freqsel=relative to EOD; sinewave=true;
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SAM: deltaf=20; contrast=20; duration=400ms; pause=100ms; repeats=0; am=false; freqsel=absolute; sinewave=true;
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#############################################################################
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$Start startsession keep overwrite
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Pause: duration=0.2s;
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detector: autoconfigure 0.2
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macro Baseline
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detector Spikes-1: save
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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#############################################################################
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$AM
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switch macrosam.cfg
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$DC
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switch macrosdc.cfg
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$Moving objects
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switch macrorfs.cfg
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$JAR
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JAR
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#############################################################################
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$Calib direct
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CalibEField: am=0;
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$Calib AM
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CalibEField: am=1;
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$Check SAM
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SAM: am=false; freqsel=relative to EOD; repeats=0; contrast=20%; deltaf=20Hz;
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#############################################################################
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$Idle
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Pause: duration=0;
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BIN
moving_objects/mirob2.t.zip
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BIN
moving_objects/mirob2.t.zip
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Binary file not shown.
206
moving_objects/relacs.cfg
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206
moving_objects/relacs.cfg
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*Settings
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Plugins:
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pluginpathes : [ base*, calibration*, misc*, ephys*, efield*, efish*, comedi*, attcs3310* ]
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pluginhelppathes: ~
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controlplugin : [ Session, Robot, AmplifierControl, SpectrumAnalyzer ]
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modelplugin : PUnitModel
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Pathes:
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pathformat : %04Y-%02m-%02d-%a2a
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defaultpath: dry/
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repropath : [ stimuli/repros/, reprodata, stimuli/repros/ ]
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infofile : info.dat
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Save:
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saverelacsfiles : true
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saveodmlfiles : false
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savenixfiles : true
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savenixcompressed: true
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saverelacscore : true
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saverelacsplugins: true
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saverelacslog : true
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saveattenuators : true
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Date/time formats:
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elapsedformat : "%02H:%02M"
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sessiontimeformat: %Hh%02Mmin%02Ssec
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reprotimeformat : %Mmin%02Ssec
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Plotting:
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printcommand: ~
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Data acquisition:
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processinterval: 50ms
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aitimeout : 10seconds
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*Metadata
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-Setup-:
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Identifier (Name): invivo1
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Maintainer : Jan Grewe
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Creator : Jan Grewe and Jan Benda
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Location (Room) : "5A17"
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Lab : Neuroethology Lab
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Institute : Institute for Neurobiology
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University : University Tuebingen
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Address : Auf der Morgenstelle 28
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*RELACS
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input data:
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inputsamplerate : 20kHz
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inputtracecapacity : 600s
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inputunipolar : false
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inputtraceid : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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inputtracescale : [ 100, 0.5, 20, 100 ]
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inputtraceunit : [ mV, mV, mV, mV ]
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inputtracedevice : [ ai-1, ai-1, ai-1, ai-1 ]
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inputtracechannel : [ 6, 0, 2, 4 ]
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inputtracereference: [ ground, ground, ground, ground ]
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inputtracemaxvalue : [ 100, 5, 3, 1 ]
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inputtracecenter : [ true, false, false, false ]
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output data:
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outputtraceid : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
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outputtracedevice : [ ao-1, ao-1, ao-1, ao-1 ]
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outputtracechannel : [ 1, 0, 2, 3 ]
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outputtracescale : [ 1, 1, 1, 1 ]
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outputtraceunit : [ V, V, V, V ]
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outputtracemaxrate : [ 20kHz, 20kHz, 20kHz, 20kHz ]
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outputtracemodality: [ electric, electric, electric, current ]
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*Macros
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file : [ macro_grating.cfg, macrorfs.cfg, macros.cfg, macro_object.cfg, macrosam.cfg, macrosdc.cfg ]
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mainfile : macros.cfg
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fallbackonreload: true
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*FilterDetectors
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Filter1:
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name : Spikes-1
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filter : DynamicSUSpikeDetector
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inputtrace : V-1
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save : true
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savemeanquality: true
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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Filter2:
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name : EOD
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filter : EODDetector
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inputtrace : EOD
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save : true
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savemeanquality: false
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plot : true
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trigger : true
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buffersize : 300000
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storesize : true
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storewidth : false
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Filter3:
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name : Chirps
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filter : ChirpDetector
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inputtrace : EOD
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save : true
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : true
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Filter4:
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name : LocalEOD-1
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filter : EODDetector
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inputtrace : LocalEOD-1
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save : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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Filter5:
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name : LocalBeat-1
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filter : BeatDetector
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inputtrace : LocalEOD-1
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save : true
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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othertrace : Chirps
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Filter7:
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name : GlobalEFieldStimulus
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filter : EODDetector
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inputtrace : GlobalEFieldStimulus
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save : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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*AudioMonitor
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device : [ "-1 default", "0 HDA Intel PCH: CX20642 Analog (hw:0,0) (2 channels)", "2 HDA Intel PCH: HDMI 0 (hw:0,3) (8 channels)", "3 HDA Intel PCH: HDMI 1 (hw:0,7) (8 channels)", "4 sysdefault (128 channels)", "5 front (2 channels)", "6 surround40 (2 channels)", "7 surround51 (2 channels)", "8 surround71 (2 channels)", "9 hdmi (8 channels)", "10 pulse (32 channels)", "11 dmix (2 channels)", "12 default (32 channels) - default" ]
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enable : true
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mute : false
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gain : 1
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audiorate: [ "44.1", "8", "16", "22.05", "44.1", "48", "96" ]kHz
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*Devices
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Device1:
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plugin : AmplMode
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device : dio-1
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ident : ampl-1
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buzzerpin : 14
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resistancepin: 15
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bridgepin : -1
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cclamppin : -1
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vclamppin : -1
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dclamppin : -1
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buzzerpulse : 500
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Device2:
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plugin: [ Mirob, Mirob ]
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device: dev
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ident : robot-1
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Device3:
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plugin: [ XYZRobot, XYZRobot ]
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device: robot-1
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ident : robot-2
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*Analog Input Devices
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Device1:
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plugin: ComediAnalogInput
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device: /dev/comedi0
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ident : ai-1
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*Analog Output Devices
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Device1:
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plugin: ComediAnalogOutput
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device: /dev/comedi0
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ident : ao-1
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*Digital I/O Devices
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Device1:
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plugin: ComediDigitalIO
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device: /dev/comedi0
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ident : dio-1
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*Attenuator Devices
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Device1:
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plugin: [ CS3310DIO, AttSim ]
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device: dio-1
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ident : attdev-1
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*Attenuator Interfaces
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Device1:
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plugin : LinearAttenuate
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device : attdev-1
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line : 0
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aodevice : ao-1
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aochannel : 0
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ident : Attenuator-0
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intensityname : amplitude
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intensityunit : mV/cm
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intensityformat: %6.3f
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Device2:
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plugin : LinearAttenuate
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device : attdev-1
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line : 1
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aodevice : ao-1
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aochannel : 1
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ident : Attenuator-1
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intensityname : amplitude
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intensityunit : mV/cm
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intensityformat: %6.3f
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817
moving_objects/relacsplugins.cfg
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817
moving_objects/relacsplugins.cfg
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*Metadata
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Recording:
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Recording quality: [ Good, lost at end with comb, lost at end single object only, Good, ~, good, poor, Poor, Fair ]
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Comment : All three combs used
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Experimenter : [ Carolin Sachgau, MZ/TH, Tim Hladnik, Martin Zeller, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
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WaterTemperature : 23.6°C
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WaterConductivity: 268uS/cm
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Cell:
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CellType (Cell type) : [ Pyramidal, Pyramidal, Unknown, E-cell, E-cell deep, unknow, E-Cell, unkown, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
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Structure (Recording location): [ Brain, Nerve, Brain ]
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BrainRegion : [ ELL, ELL, Torus, n.A. ]
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BrainSubRegion : [ CLS, CLS, Pyramidal, Unknown, CMS, ~, LS, MS ]
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Depth : -938um
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Lateral position : -1.5mm
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Transverse section : -9
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Subject:
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Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
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Gender (Sex): [ unknown, unknown, Male, Female ]
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Size : 15.5cm
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Weight : 7.8g
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Identifier : "2018lepto77"
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-Preparation-:
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Type : [ in vivo, in vivo, slice ]
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Anaesthesia : true
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Anaesthetic (Drug) : MS 222
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AnaestheticDose (Concentration): 100mg/l
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LocalAnaesthesia : true
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LocalAnaesthetic (Drug) : Lidocaine
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Immobilization : true
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ImmobilizationDrug (Drug) : Tubocurarin 5mg/L
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ImmobilizationDose : 100ul
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*Control: Session
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ephys: true
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*Control: Robot
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General:
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robot: robot-2
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Stored positions:
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FishHeadPosition : [ 418.75mm, 343.39mm, 219.11mm ]
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|
FishTailPosition : [ 418.75mm, 221.08mm, 219.11mm ]
|
||||||
|
MovementAreaStart : [ 0mm, 0mm, 0mm ]
|
||||||
|
MovementAreaEnd : [ 0mm, 0mm, 0mm ]
|
||||||
|
ForbiddenAreaStart: 0.499mm
|
||||||
|
ForbiddenAreaEnd : 340mm
|
||||||
|
CustomPosition : [ 400mm, 0mm, 0mm ]
|
||||||
|
Tool clamp:
|
||||||
|
toolreleasedelay: 1s
|
||||||
|
toolfixdelay : 2.5s
|
||||||
|
autoclamp : true
|
||||||
|
|
||||||
|
*Control: AmplifierControl
|
||||||
|
initmode : [ Bridge, Current-clamp, Dynamic-clamp, Voltage-clamp, Manual selection ]
|
||||||
|
resistancecurrent: 1nA
|
||||||
|
adjust : false
|
||||||
|
maxresistance : 100MOhm
|
||||||
|
buzzpulse : 500ms
|
||||||
|
showswitchmessage: true
|
||||||
|
showbridge : true
|
||||||
|
showcc : false
|
||||||
|
showdc : false
|
||||||
|
showvc : false
|
||||||
|
showmanual : false
|
||||||
|
syncpulse : 10us
|
||||||
|
syncmode : 0samples
|
||||||
|
vcgain : 100
|
||||||
|
vctau : 1ms
|
||||||
|
|
||||||
|
*Control: SpectrumAnalyzer
|
||||||
|
intrace : [ LocalEOD-1, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
origin : [ before end of data, before signal, after signal ]
|
||||||
|
offset : 0ms
|
||||||
|
duration : 1000ms
|
||||||
|
resolution: 10Hz
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
fmax : 500Hz
|
||||||
|
decibel : true
|
||||||
|
peak : true
|
||||||
|
pmin : -50dB
|
||||||
|
|
||||||
|
*Model: PUnitModel
|
||||||
|
General:
|
||||||
|
EOD:
|
||||||
|
eodtype : [ Apteronotus, None, Sine, Apteronotus, Eigenmannia ]
|
||||||
|
eodfreq : 800Hz
|
||||||
|
eodfreqsd : 10Hz
|
||||||
|
eodfreqtau : 10000s
|
||||||
|
eodlocalamplitude : 1mV/cm
|
||||||
|
eodglobalamplitude: 1mV/cm
|
||||||
|
localstimulusgain : 5.00
|
||||||
|
globalstimulusgain: 0.00
|
||||||
|
stimulusgain : 1.00
|
||||||
|
Spikes:
|
||||||
|
voltagescale: 0.5
|
||||||
|
General:
|
||||||
|
Spike generator:
|
||||||
|
spikemodel: [ Wang-Buzsaki, Stimulus, Passive membrane, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
|
||||||
|
noised : 0.1
|
||||||
|
deltat : 0.05ms
|
||||||
|
integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
|
||||||
|
Voltage clamp:
|
||||||
|
vcgain: 10
|
||||||
|
vctau : 0.1ms
|
||||||
|
Currents:
|
||||||
|
Voltage-gated current 1 - activation only:
|
||||||
|
gmc : 2
|
||||||
|
emc : -90mV
|
||||||
|
mvmc : -35mV
|
||||||
|
mwmc : 10mV
|
||||||
|
taumc: 30ms
|
||||||
|
Voltage-gated current 2 - activation and inactivation:
|
||||||
|
gmhc : 0
|
||||||
|
emhc : -90mV
|
||||||
|
mvmhc : -40mV
|
||||||
|
mwmhc : 10mV
|
||||||
|
taummhc: 10ms
|
||||||
|
pmmhc : 1
|
||||||
|
hvmhc : -40mV
|
||||||
|
hwmhc : 10mV
|
||||||
|
tauhmhc: 10ms
|
||||||
|
pmhhc : 1
|
||||||
|
|
||||||
|
*Model: Stimulus
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Passive membrane
|
||||||
|
Parameter:
|
||||||
|
R: 50MOhm
|
||||||
|
C: 25pF
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Morris-Lecar
|
||||||
|
General:
|
||||||
|
params: [ Custom, Type I, Type II ]
|
||||||
|
Calcium current:
|
||||||
|
gca : 4nS
|
||||||
|
eca : 120mV
|
||||||
|
mvca: -1.2mV
|
||||||
|
mkca: 18mV
|
||||||
|
Potassium current:
|
||||||
|
gk : 8nS
|
||||||
|
ek : -84mV
|
||||||
|
mvk : 12mV
|
||||||
|
mkk : 17.4mV
|
||||||
|
mphik: 0.067kHz
|
||||||
|
Leak current:
|
||||||
|
gl: 2nS
|
||||||
|
el: -60mV
|
||||||
|
c : 20pF
|
||||||
|
Input:
|
||||||
|
timescale: 10
|
||||||
|
gain : 1
|
||||||
|
offset : 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Hodgkin-Huxley
|
||||||
|
Sodium current:
|
||||||
|
gna: 120mS/cm^2
|
||||||
|
ena: 50mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 36mS/cm^2
|
||||||
|
ek: -77mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.3mS/cm^2
|
||||||
|
el : -54.4mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 1
|
||||||
|
Input:
|
||||||
|
gain : 50
|
||||||
|
offset: 10muA/cm^2
|
||||||
|
|
||||||
|
*Model: Connor
|
||||||
|
Sodium current:
|
||||||
|
gna: 120mS/cm^2
|
||||||
|
ena: 50mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 20mS/cm^2
|
||||||
|
ek: -77mV
|
||||||
|
A current:
|
||||||
|
gka: 47mS/cm^2
|
||||||
|
eka: -80mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.3mS/cm^2
|
||||||
|
el : -22mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 1
|
||||||
|
Input:
|
||||||
|
gain : 50
|
||||||
|
offset: 30muA/cm^2
|
||||||
|
|
||||||
|
*Model: Wang-Buzsaki
|
||||||
|
Sodium current:
|
||||||
|
gna: 35mS/cm^2
|
||||||
|
ena: 55mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 9mS/cm^2
|
||||||
|
ek: -90mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.1mS/cm^2
|
||||||
|
el : -65mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 5
|
||||||
|
Input:
|
||||||
|
gain : 50
|
||||||
|
offset: 6muA/cm^2
|
||||||
|
|
||||||
|
*Event Detector: Spikes-1
|
||||||
|
Detector:
|
||||||
|
minthresh: 5.0mV
|
||||||
|
ratio : 10%
|
||||||
|
testwidth: false
|
||||||
|
fitwidth : 3.00ms
|
||||||
|
|
||||||
|
*Event Detector: EOD
|
||||||
|
threshold : 0.1mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*Event Detector: Chirps
|
||||||
|
minthresh: 10Hz
|
||||||
|
|
||||||
|
*Event Detector: LocalEOD-1
|
||||||
|
threshold : 0.41mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*Event Detector: LocalBeat-1
|
||||||
|
minthresh: 0.100mV
|
||||||
|
ratio : 35%
|
||||||
|
|
||||||
|
*Event Detector: GlobalEFieldStimulus
|
||||||
|
threshold : 1.8129mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*RePro: Pause
|
||||||
|
duration : 0sec
|
||||||
|
savedata : false
|
||||||
|
plotwidth: 0sec
|
||||||
|
|
||||||
|
*RePro: Record
|
||||||
|
duration : 1sec
|
||||||
|
plotwidth: 0sec
|
||||||
|
dioout : false
|
||||||
|
diodevice: dio-1
|
||||||
|
dioline : 0
|
||||||
|
|
||||||
|
*RePro: SaveTraces
|
||||||
|
General:
|
||||||
|
duration : 1sec
|
||||||
|
savedata : false
|
||||||
|
split : false
|
||||||
|
dioout : false
|
||||||
|
diodevice: dio-1
|
||||||
|
dioline : 0
|
||||||
|
Analog input traces:
|
||||||
|
trace-V-1 : true
|
||||||
|
trace-EOD : true
|
||||||
|
trace-LocalEOD-1 : true
|
||||||
|
trace-GlobalEFieldStimulus: true
|
||||||
|
Events:
|
||||||
|
events-Spikes-1 : true
|
||||||
|
events-EOD : true
|
||||||
|
events-Chirps : true
|
||||||
|
events-LocalEOD-1 : true
|
||||||
|
events-LocalBeat-1-1 : true
|
||||||
|
events-LocalBeat-1-2 : true
|
||||||
|
events-GlobalEFieldStimulus: true
|
||||||
|
|
||||||
|
*RePro: SetAttenuatorGain
|
||||||
|
outrace : V-1
|
||||||
|
gain : 1
|
||||||
|
interactive: true
|
||||||
|
|
||||||
|
*RePro: SetDigitalOutput
|
||||||
|
device : dio-1
|
||||||
|
line : 0
|
||||||
|
value : 0
|
||||||
|
interactive: false
|
||||||
|
|
||||||
|
*RePro: SetInputGain
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
gainindex : 3
|
||||||
|
interactive: true
|
||||||
|
|
||||||
|
*RePro: SetOutput
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||||
|
value : 0V
|
||||||
|
intensity : 1
|
||||||
|
interactive: false
|
||||||
|
|
||||||
|
*RePro: Spectrogram
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
width : 100ms
|
||||||
|
step : 0ms
|
||||||
|
tmax : 10s
|
||||||
|
duration: 0s
|
||||||
|
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
powermax: true
|
||||||
|
fmax : 2000Hz
|
||||||
|
pmax : 0dB
|
||||||
|
pmin : -50dB
|
||||||
|
|
||||||
|
*RePro: TransferFunction
|
||||||
|
Stimulus:
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||||
|
offsetbase: [ custom, current ]value
|
||||||
|
offset : 0V
|
||||||
|
amplitude : 1V
|
||||||
|
clip : 4
|
||||||
|
intensity : 1
|
||||||
|
fmin : 0Hz
|
||||||
|
fmax : 1000Hz
|
||||||
|
duration : 1s
|
||||||
|
pause : 1s
|
||||||
|
repeats : 100
|
||||||
|
Analysis:
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
plotstdevs : true
|
||||||
|
plotcoherence: true
|
||||||
|
plotdecibel : false
|
||||||
|
|
||||||
|
*RePro: Wait
|
||||||
|
absdate: false
|
||||||
|
date : ~
|
||||||
|
days : 0days
|
||||||
|
time : "00:00:00.000"
|
||||||
|
|
||||||
|
*RePro: AttenuatorCheck
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
duration : 1s
|
||||||
|
type : [ attenuation, noise ]
|
||||||
|
frequency: 50Hz
|
||||||
|
amplitude: 1Vmax
|
||||||
|
minlevel : 0dB
|
||||||
|
maxlevel : 100dB
|
||||||
|
dlevel : 1dB
|
||||||
|
adjust : true
|
||||||
|
|
||||||
|
*RePro: InputRangeCheck
|
||||||
|
outtrace: [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
duration: 1000ms
|
||||||
|
pause : 1000ms
|
||||||
|
amplnum : 10
|
||||||
|
|
||||||
|
*RePro: RestartDelay
|
||||||
|
duration: 100ms
|
||||||
|
repeats : 100
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
|
||||||
|
*RePro: StimulusDelay
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM, LocalEField, I ]
|
||||||
|
intensity : 1
|
||||||
|
samplerate: 10kHz
|
||||||
|
duration : 10ms
|
||||||
|
pause : 50ms
|
||||||
|
repeats : 100
|
||||||
|
setdelay : [ none, minimum, mean ]
|
||||||
|
|
||||||
|
*RePro: BridgeTest
|
||||||
|
amplitude : 1V
|
||||||
|
duration : 10ms
|
||||||
|
pause : 100ms
|
||||||
|
average : 10
|
||||||
|
skipspikes : true
|
||||||
|
dynamicrange: false
|
||||||
|
rate : 0.01
|
||||||
|
plottrace : true
|
||||||
|
|
||||||
|
*RePro: CalibrateSyncPulse
|
||||||
|
imin : -1
|
||||||
|
imax : 1
|
||||||
|
istep : 0.001
|
||||||
|
skipwin : 1000ms
|
||||||
|
duration: 1000ms
|
||||||
|
|
||||||
|
*RePro: CapacityCompensation
|
||||||
|
amplitude : 1V
|
||||||
|
duration : 200ms
|
||||||
|
frequency : 100Hz
|
||||||
|
showcycles : 10
|
||||||
|
pause : 100ms
|
||||||
|
average : 10
|
||||||
|
skipspikes : true
|
||||||
|
dynamicrange: false
|
||||||
|
rate : 0.01
|
||||||
|
|
||||||
|
*RePro: Iontophoresis
|
||||||
|
durationpos : 1s
|
||||||
|
amplitudepos : 1V
|
||||||
|
pausepos : 1s
|
||||||
|
durationneg : 1s
|
||||||
|
amplitudeneg : 1V
|
||||||
|
pauseneg : 1s
|
||||||
|
fortunes : true
|
||||||
|
fortuneperiod: 10s
|
||||||
|
|
||||||
|
*RePro: SetLeak
|
||||||
|
interactive : true
|
||||||
|
preset : [ previous, zero, custom ]values
|
||||||
|
g : 0nS
|
||||||
|
E : 0mV
|
||||||
|
reversaltorest: true
|
||||||
|
involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
duration : 100ms
|
||||||
|
|
||||||
|
*RePro: SetVGate
|
||||||
|
interactive : true
|
||||||
|
preset : [ previous, zero, custom ]values
|
||||||
|
g : 0nS
|
||||||
|
E : 0mV
|
||||||
|
vmid : 0mV
|
||||||
|
width : 0mV
|
||||||
|
tau : 10ms
|
||||||
|
reversaltorest: true
|
||||||
|
involtage : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
duration : 100ms
|
||||||
|
|
||||||
|
*RePro: Beats
|
||||||
|
Stimulation:
|
||||||
|
name : ~
|
||||||
|
duration : 10seconds
|
||||||
|
pause : 20seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
deltafrange : "10"Hz
|
||||||
|
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
fixeddf : false
|
||||||
|
amplitude : 1mV/cm
|
||||||
|
amtype : [ none, sine, rectangular ]
|
||||||
|
amfreq : "1"Hz
|
||||||
|
amamplitude : "100"%
|
||||||
|
repeats : 10
|
||||||
|
fakefish : 0Hz
|
||||||
|
Chirps:
|
||||||
|
generatechirps : false
|
||||||
|
chirpsize : 100Hz
|
||||||
|
chirpwidth : 100ms
|
||||||
|
chirpampl : 0%
|
||||||
|
chirpkurtosis : 1
|
||||||
|
chirpfrequencies: ~Hz
|
||||||
|
chirptimesfile : ~
|
||||||
|
chirptimeshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
Analysis:
|
||||||
|
before : 1seconds
|
||||||
|
after : 1seconds
|
||||||
|
averagetime : 1seconds
|
||||||
|
usepsd : true
|
||||||
|
mineodfreq : 100Hz
|
||||||
|
maxeodfreq : 2000Hz
|
||||||
|
eodfreqprec : 1Hz
|
||||||
|
neod : 2
|
||||||
|
showstimulus: false
|
||||||
|
split : false
|
||||||
|
savetraces : false
|
||||||
|
|
||||||
|
*RePro: CalibEField
|
||||||
|
General:
|
||||||
|
reset : true
|
||||||
|
resetval : 0.1
|
||||||
|
am : true
|
||||||
|
beatfreq : 10Hz
|
||||||
|
frequency: 670Hz
|
||||||
|
duration : 600ms
|
||||||
|
pause : 10ms
|
||||||
|
Range:
|
||||||
|
amplsel : [ contrast, amplitude ]
|
||||||
|
targetcontrast : 15%
|
||||||
|
mincontrast : 10%
|
||||||
|
maxcontrast : 20%
|
||||||
|
targetamplitude: 1mV/cm
|
||||||
|
minamplitude : 0.5mV/cm
|
||||||
|
maxamplitude : 2mV/cm
|
||||||
|
numintensities : 8
|
||||||
|
|
||||||
|
*RePro: CalibrateRobot
|
||||||
|
robot: robot-2
|
||||||
|
|
||||||
|
*RePro: DualBeat
|
||||||
|
Stimulus:
|
||||||
|
rewarded : [ A, B ]
|
||||||
|
eodf : 0.0Hz
|
||||||
|
duration : 10seconds
|
||||||
|
deltafA : 25.0Hz
|
||||||
|
harmonicA : false
|
||||||
|
amplitudeA: 1.000V
|
||||||
|
deltafB : -50.0Hz
|
||||||
|
harmonicB : false
|
||||||
|
amplitudeB: 1.000V
|
||||||
|
Experiment:
|
||||||
|
noFish : false
|
||||||
|
randomizeAmpl : true
|
||||||
|
amplitudeRange : 20%
|
||||||
|
randomSminus : false
|
||||||
|
sminusRange : 200Hz
|
||||||
|
training : true
|
||||||
|
randomElectrode : true
|
||||||
|
rewardedElectrode: [ "1", "2" ]
|
||||||
|
trainingTrials : 10
|
||||||
|
testTrials : 5
|
||||||
|
testBeat : -25.0Hz
|
||||||
|
testAmplitude : 1.000V
|
||||||
|
stimOff : true
|
||||||
|
rewardInTest : true
|
||||||
|
harmonic : true
|
||||||
|
Setup:
|
||||||
|
scaling1: 1.000
|
||||||
|
scaling2: 1.000
|
||||||
|
EOD estimation:
|
||||||
|
intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
usepsd : true
|
||||||
|
mineodfreq : 100Hz
|
||||||
|
maxeodfreq : 2000Hz
|
||||||
|
eodfreqprec: 1Hz
|
||||||
|
averagetime: 2s
|
||||||
|
|
||||||
|
*RePro: EFieldGeometry
|
||||||
|
Enviroment data:
|
||||||
|
temperature : 26°C
|
||||||
|
conductivity: 330µS
|
||||||
|
water_level : 20cm
|
||||||
|
Measurement data:
|
||||||
|
robot : robot-2
|
||||||
|
type : ~
|
||||||
|
distance : 0mm
|
||||||
|
head_length : 20mm
|
||||||
|
tail_length : 20mm
|
||||||
|
width_posY : 50mm
|
||||||
|
width_negY : 50mm
|
||||||
|
height : 50mm
|
||||||
|
depth : 50mm
|
||||||
|
step_length_x: 5mm
|
||||||
|
step_length_y: 5mm
|
||||||
|
step_length_z: 5mm
|
||||||
|
|
||||||
|
*RePro: JAR
|
||||||
|
Stimulation:
|
||||||
|
duration : 10seconds
|
||||||
|
pause : 10seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
deltafstep : 2Hz
|
||||||
|
deltafmax : 12Hz
|
||||||
|
deltafmin : -12Hz
|
||||||
|
deltafrange : ~
|
||||||
|
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
repeats : 200
|
||||||
|
Amplitudes:
|
||||||
|
amplsel : [ contrast, absolute ]
|
||||||
|
contrastmax : 20%
|
||||||
|
contrastmin : 10%
|
||||||
|
contraststep: 20%
|
||||||
|
amplmin : 1mV/cm
|
||||||
|
amplmax : 2mV/cm
|
||||||
|
amplstep : 1mV/cm
|
||||||
|
S&timulus:
|
||||||
|
genstim : true
|
||||||
|
sinewave: true
|
||||||
|
file : ~
|
||||||
|
sigstdev: 1
|
||||||
|
warpfile: false
|
||||||
|
fakefish: 0Hz
|
||||||
|
A&nalysis:
|
||||||
|
before : 1seconds
|
||||||
|
after : 8seconds
|
||||||
|
savetraces : true
|
||||||
|
jaraverage : 500ms
|
||||||
|
chirpaverage: 20ms
|
||||||
|
eodsavetime : 1000ms
|
||||||
|
|
||||||
|
*RePro: LinearField
|
||||||
|
duration: 1s
|
||||||
|
|
||||||
|
*RePro: ManualJAR
|
||||||
|
deltaf : 0.0Hz
|
||||||
|
lineardeltaf : false
|
||||||
|
deltaf2 : 0.0Hz
|
||||||
|
amplitude : 1.0mV
|
||||||
|
duration : 10seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
fakefish : 0Hz
|
||||||
|
showlineardeltaf: false
|
||||||
|
before : 1seconds
|
||||||
|
after : 1seconds
|
||||||
|
averagetime : 1seconds
|
||||||
|
split : false
|
||||||
|
savetraces : false
|
||||||
|
|
||||||
|
*RePro: BaselineActivity
|
||||||
|
Timing:
|
||||||
|
duration: 300ms
|
||||||
|
repeats : 0
|
||||||
|
Analysis:
|
||||||
|
isimax : 20ms
|
||||||
|
isistep : 0.2ms
|
||||||
|
ratedt : 0.05ms
|
||||||
|
ratetmax: 2ms
|
||||||
|
Files:
|
||||||
|
eodduration : 2000ms
|
||||||
|
saveeodtrace: false
|
||||||
|
saveeodtimes: false
|
||||||
|
Control:
|
||||||
|
auto : [ never, once, always ]
|
||||||
|
adjust: false
|
||||||
|
|
||||||
|
*RePro: Chirps
|
||||||
|
Chirp parameter:
|
||||||
|
nchirps : 10
|
||||||
|
beatpos : 10
|
||||||
|
beatstart : 0.25
|
||||||
|
minspace : 200ms
|
||||||
|
firstspace : 200ms
|
||||||
|
chirpsize : 100Hz
|
||||||
|
chirpwidth : 14ms
|
||||||
|
chirpampl : 2%
|
||||||
|
chirpsel : [ generated, from file ]
|
||||||
|
chirpkurtosis: 1
|
||||||
|
file : ~
|
||||||
|
Beat parameter:
|
||||||
|
deltaf : 10Hz
|
||||||
|
contrast: 20%
|
||||||
|
am : true
|
||||||
|
sinewave: true
|
||||||
|
playback: false
|
||||||
|
pause : 1000ms
|
||||||
|
repeats : 6
|
||||||
|
Analysis:
|
||||||
|
sigma : 2ms
|
||||||
|
adjust: true
|
||||||
|
|
||||||
|
*RePro: FICurve
|
||||||
|
Test-Intensities:
|
||||||
|
duration : 400ms
|
||||||
|
maxintfac : 130%
|
||||||
|
minintfac : 70%
|
||||||
|
nints : 16
|
||||||
|
repeats : 1
|
||||||
|
blockrepeats : 10
|
||||||
|
singlerepeats: 1
|
||||||
|
intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
intincrement : -2
|
||||||
|
Pre-Intensities:
|
||||||
|
preduration : 0ms
|
||||||
|
maxpreintfac : 140%
|
||||||
|
minpreintfac : 60%
|
||||||
|
npreints : 2
|
||||||
|
preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
Control:
|
||||||
|
am : true
|
||||||
|
pause : 1000ms
|
||||||
|
delay : 200ms
|
||||||
|
onsettime : 50ms
|
||||||
|
rangeintincrement: 4
|
||||||
|
minrate : 40Hz
|
||||||
|
minratefrac : 15%
|
||||||
|
adjust : false
|
||||||
|
|
||||||
|
*RePro: FileStimulus
|
||||||
|
General:
|
||||||
|
name: ~
|
||||||
|
Stimulus:
|
||||||
|
file : /home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat
|
||||||
|
sigstdev : 0.3
|
||||||
|
duration : 0ms
|
||||||
|
pause : 1000ms
|
||||||
|
amplsel : [ contrast, absolute ]
|
||||||
|
contrast : 5%
|
||||||
|
amplitude: 1mV/cm
|
||||||
|
am : true
|
||||||
|
repeats : 5
|
||||||
|
Additional noise:
|
||||||
|
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
|
||||||
|
uppercutoff : 300Hz
|
||||||
|
lowercutoff : 0Hz
|
||||||
|
noisetau : 100ms
|
||||||
|
noisecontrast: 5%
|
||||||
|
noiseampl : 80mV/cm
|
||||||
|
Analysis:
|
||||||
|
binwidth: 5ms
|
||||||
|
before : 0ms
|
||||||
|
after : 0ms
|
||||||
|
plotpsd : true
|
||||||
|
psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
adjust : false
|
||||||
|
|
||||||
|
*RePro: MovingObjects
|
||||||
|
Movement:
|
||||||
|
startpos : [ -60mm, 0mm, -8mm ]
|
||||||
|
traveldist : 120mm
|
||||||
|
travelspeed : 10mm/s
|
||||||
|
movementaxis: [ x, x, y, z ]
|
||||||
|
repeats : 4
|
||||||
|
pause : 0.1s
|
||||||
|
object : [ small, small, medium comb, ~, pvc comb 4cm, pvc comb 1cm, perspex bar, metal sphere, large comb ]
|
||||||
|
Parameter space:
|
||||||
|
distmin : 0mm
|
||||||
|
distmax : 0mm
|
||||||
|
diststep : 10mm
|
||||||
|
speedmin : 40mm/s
|
||||||
|
speedmax : 240mm/s
|
||||||
|
speedstep: 40mm/s
|
||||||
|
Robot setup:
|
||||||
|
xmapping: [ y, y, z, x ]
|
||||||
|
xinvert : true
|
||||||
|
ymapping: [ z, z, x, y ]
|
||||||
|
yinvert : false
|
||||||
|
zmapping: [ x, x, y, z ]
|
||||||
|
zinvert : false
|
||||||
|
safepos : [ 450, 0, 0 ]
|
||||||
|
outpos : [ 450, 300, 100 ]
|
||||||
|
|
||||||
|
*RePro: ReceptiveField
|
||||||
|
2D search:
|
||||||
|
name : ~
|
||||||
|
xmin : 25mm
|
||||||
|
xmax : 126mm
|
||||||
|
xspeed : 10mm/s
|
||||||
|
ymin : 0mm
|
||||||
|
ymax : 0mm
|
||||||
|
yspeed : 10mm/s
|
||||||
|
zpos : 5mm
|
||||||
|
followmidline: true
|
||||||
|
npasses : 1
|
||||||
|
pause : 1000ms
|
||||||
|
Stimulation:
|
||||||
|
deltaf : 20Hz
|
||||||
|
amplitude: 40mV
|
||||||
|
Analysis:
|
||||||
|
nfft : 1024
|
||||||
|
nshift : 128
|
||||||
|
kernelwidth: 0.001ms
|
||||||
|
Robot setup:
|
||||||
|
robotdev : robot-2
|
||||||
|
xmapping : [ y, z, x ]
|
||||||
|
xinvert : true
|
||||||
|
ymapping : [ z, x, y ]
|
||||||
|
yinvert : true
|
||||||
|
zmapping : [ x, y, z ]
|
||||||
|
zinvert : false
|
||||||
|
safex : 350mm
|
||||||
|
safey : 0mm
|
||||||
|
safez : 0mm
|
||||||
|
taxispeed: 40mm/s
|
||||||
|
|
||||||
|
*RePro: RobotToFishPosition
|
||||||
|
Position:
|
||||||
|
destination : [ 0mm, 0mm, 0mm ]
|
||||||
|
followmidline: true
|
||||||
|
Robot setup:
|
||||||
|
xmapping: [ y, y, z, x ]
|
||||||
|
xinvert : true
|
||||||
|
ymapping: [ z, z, x, y ]
|
||||||
|
yinvert : true
|
||||||
|
zmapping: [ x, x, y, z ]
|
||||||
|
zinvert : false
|
||||||
|
|
||||||
|
*RePro: SAM
|
||||||
|
General:
|
||||||
|
name: ~
|
||||||
|
Stimulus:
|
||||||
|
duration : 1000ms
|
||||||
|
pause : 1000ms
|
||||||
|
freqsel : [ relative to EOD, absolute ]
|
||||||
|
deltaf : 20Hz
|
||||||
|
contrast : 20%
|
||||||
|
repeats : 6
|
||||||
|
am : true
|
||||||
|
sinewave : true
|
||||||
|
ampl : "0.0"
|
||||||
|
phase : "0.0"pi
|
||||||
|
contrastsel: [ fundamental, peak amplitude ]
|
||||||
|
Analysis:
|
||||||
|
skip : 0.5Periods
|
||||||
|
ratebins: 10
|
||||||
|
before : 0ms
|
||||||
|
after : 0ms
|
||||||
|
adjust : false
|
||||||
|
|
||||||
|
*Attenuator-0
|
||||||
|
plugin : LinearAttenuate
|
||||||
|
ident : Attenuator-0
|
||||||
|
device : attdev-1
|
||||||
|
line : 0
|
||||||
|
aodevice : ao-1
|
||||||
|
aochannel : 0
|
||||||
|
intensityname : amplitude
|
||||||
|
intensityunit : mV/cm
|
||||||
|
intensityformat: %6.3f
|
||||||
|
frequencyname : ~
|
||||||
|
frequencyunit : Hz
|
||||||
|
frequencyformat: %7.0f
|
||||||
|
gain : 0.19395
|
||||||
|
offset : 0
|
||||||
|
|
||||||
|
*Attenuator-1
|
||||||
|
plugin : LinearAttenuate
|
||||||
|
ident : Attenuator-1
|
||||||
|
device : attdev-1
|
||||||
|
line : 1
|
||||||
|
aodevice : ao-1
|
||||||
|
aochannel : 1
|
||||||
|
intensityname : amplitude
|
||||||
|
intensityunit : mV/cm
|
||||||
|
intensityformat: %6.3f
|
||||||
|
frequencyname : ~
|
||||||
|
frequencyunit : Hz
|
||||||
|
frequencyformat: %7.0f
|
||||||
|
gain : 0.050541
|
||||||
|
offset : 0
|
||||||
|
|
||||||
Loading…
Reference in New Issue
Block a user