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[04/2020] add juxta settings

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efish
2020-04-30 14:54:13 +02:00
parent 3acc4fa942
commit a2a6d8312b
16 changed files with 1185 additions and 98 deletions
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2
labrotation/macros.cfg
View File

@@ -30,6 +30,8 @@ switch macrosAlexandra.cfg
$Carlos
switch macrosCarlos.cfg
$Ramona
switch macrosRamona.cfg
#$JAR
#JAR

6
labrotation/macrosAlexandra.cfg
View File

@@ -10,7 +10,10 @@ $FICurve AM
FICurve: am=true;
$Chirps
Chirps: chirpsize=100Hz; deltaf=(-500..500..75, random); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false; minspace=500ms; firstspace=500ms
Chirps: chirpsize=100Hz; deltaf=(-500..750..75, random); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false; minspace=500ms; firstspace=500ms
$ChirpsFine
Chirps: chirpsize=100Hz; deltaf=(-25, -10, -5, 5, 10, 50, -100, -150, -250, -75, random); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false; minspace=500ms; firstspace=500ms
#Chirps: chirpsize=100Hz; deltaf=(10, 100, -200, -60); contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
#Chirps: chirpsize=100Hz; deltaf=(10, 100, -200, -60); contrast=5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
#Chirps: chirpsize=60Hz; deltaf=(10, 100, -200, -60); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
@@ -34,6 +37,5 @@ Chirps: chirpsize=100Hz; deltaf=(-500..500..75, random); contrast=20%; chirpwidt
#$Chirps test
#Chirps: chirpsize=100Hz; deltaf=(-200..200..25, random); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=false; sinewave=true; playback=false
$Back
switch macros.cfg

14
labrotation/macrosCarlos.cfg
View File

@@ -5,16 +5,16 @@ BaselineActivity: repeats=3000; saveeodtrace=true;
$FICurve AM
FICurve: am=true;
$noise Stimuli
$Noise Stimuli
#FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=1.0%; repeats=1; plotpsd=true
#FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=5.0%; repeats=1; plotpsd=true
#FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=40.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_350to400hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_400hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_250to300hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_150to200hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=20.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat ; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_350to400hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_50hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_400hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_250to300hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
FileStimulus: file=/home/efish/stimuli/whitenoise/dennis/InputArr_150to200hz_30s.dat; duration=30000ms; sigstdev=0.25; am=true; contrast=10.0%; repeats=1; plotpsd=true
$Back
switch macros.cfg

8
labrotation/relacs.cfg
View File

@@ -45,12 +45,12 @@
inputtracecapacity : 600s
inputunipolar : false
inputtraceid : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
inputtracescale : [ 100, 1, 20, 5 ]
inputtracescale : [ 100, 0.2, 10, 5 ]
inputtraceunit : [ mV, mV, mV, mV ]
inputtracedevice : [ ai-1, ai-1, ai-1, ai-1 ]
inputtracechannel : [ 6, 0, 2, 4 ]
inputtracereference: [ ground, ground, ground, ground ]
inputtracemaxvalue : [ 100, 5, 3, 1 ]
inputtracemaxvalue : [ 100, 2, 3, 1 ]
inputtracecenter : [ true, true, true, true ]
output data:
outputtraceid : [ GlobalEField, GlobalEFieldAM, V, I ]
@@ -62,7 +62,7 @@
outputtracemodality: [ voltage, voltage, voltage, current ]
*Macros
file : [ macrosCarlos.cfg, macrosAlexandra.cfg, macros.cfg, macrosam.cfg ]
file : [ macrosAlexandra.cfg, macrosRamona.cfg, macrosCarlos.cfg, macros.cfg, macrosCalib.cfg, macrosam.cfg ]
mainfile : macros.cfg
fallbackonreload: true
@@ -160,7 +160,7 @@
storewidth : false
*AudioMonitor
device : [ "-1 default", "0 HDA Intel PCH: CX20642 Analog (hw:0,0) (2 channels)", "2 HDA Intel PCH: HDMI 0 (hw:0,3) (8 channels)", "3 HDA Intel PCH: HDMI 1 (hw:0,7) (8 channels)", "4 sysdefault (128 channels)", "5 front (2 channels)", "6 surround40 (2 channels)", "7 surround51 (2 channels)", "8 surround71 (2 channels)", "9 hdmi (8 channels)", "10 pulse (32 channels)", "11 dmix (2 channels)", "12 default (32 channels) - default" ]
device : [ "-1 default", "2 HDA Intel PCH: HDMI 0 (hw:0,3) (8 channels)", "3 HDA Intel PCH: HDMI 1 (hw:0,7) (8 channels)", "5 hdmi (8 channels)", "6 pulse (32 channels)", "7 default (32 channels) - default" ]
enable : true
mute : false
gain : 1

52
labrotation/relacsplugins.cfg
View File

@@ -1,24 +1,24 @@
*Metadata
Recording:
Recording quality: [ good, poor, fair, Good, ~, good, Poor, Fair ]
Recording quality: [ Good, poor, fair, Good, ~, good, Poor, Fair ]
Comment : ~
Experimenter : [ Ramona Schaefer, Christina Weiss, Christina Langenberger, Ramona Schaefer, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
Experimenter : [ Ramona Schaefer, Alexandra and Carlos, Christina Weiss, Christina Langenberger, Ramona Schaefer, Dennis Huben, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Jan Benda ]
WaterTemperature : 23.7°C
WaterConductivity: 488uS/cm
WaterConductivity: 300uS/cm
Cell:
CellType (Cell type) : [ P-unit, Pyramidal, E-cell, E-cell deep, unknow, E-Cell, unkown, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
Structure (Recording location): [ Nerve, Nerve, Brain ]
BrainRegion : [ n.A., TSd, Torus, n.A., ELL ]
BrainSubRegion : [ ~, ~, LS, CLS, CMS, MS ]
Depth : -166um
Depth : 0um
Lateral position : 0mm
Transverse section : 0
Subject:
Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
Gender (Sex): [ unknown, unknown, Male, Female ]
Size : 17cm
Weight : 12.9g
Identifier : "2017lepto04"
Weight : 12g
Identifier : "2018lepto74"
-Preparation-:
Type : [ in vivo, in vivo, slice ]
Anaesthesia : true
@@ -28,7 +28,7 @@
LocalAnaesthetic (Drug) : Lidocaine
Immobilization : true
ImmobilizationDrug (Drug) : Tubocurarin 5mg/L
ImmobilizationDose : 75ul
ImmobilizationDose : 50ul
*Control: Session
ephys: true
@@ -51,7 +51,7 @@
vctau : 1ms
*Control: SpectrumAnalyzer
intrace : [ LocalEOD-1, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
intrace : [ EOD, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
origin : [ before end of data, before signal, after signal ]
offset : 0ms
duration : 1000ms
@@ -194,7 +194,7 @@
*Event Detector: Spikes-1
Detector:
minthresh: 3.0mV
minthresh: 2.0mV
decay : 1sec
ratio : 12%
testwidth: false
@@ -205,21 +205,21 @@
trendtime : 2.0sec
*Event Detector: EOD
threshold : 0.64mV
threshold : 0.77mV
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
*Event Detector: Chirps
minthresh: 10Hz
*Event Detector: LocalEOD-1
threshold : 0.22mV
threshold : 0.6mV
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
*Event Detector: LocalBeat-1
minthresh: 0.050mV
minthresh: 0.131mV
*Event Detector: GlobalEFieldStimulus
threshold : 0.046195mV
threshold : 0.11759mV
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
*RePro: Pause
@@ -420,7 +420,7 @@
General:
reset : false
resetval : 0.1
am : false
am : true
beatfreq : 20Hz
frequency: 600Hz
duration : 600ms
@@ -429,7 +429,7 @@
amplsel : [ contrast, amplitude ]
targetcontrast : 20%
mincontrast : 10%
maxcontrast : 40%
maxcontrast : 35%
targetamplitude: 1mV/cm
minamplitude : 0.5mV/cm
maxamplitude : 2mV/cm
@@ -569,8 +569,8 @@
nchirps : 10
beatpos : 10
beatstart : 0.25
minspace : 200ms
firstspace : 200ms
minspace : 500ms
firstspace : 500ms
chirpsize : 100Hz
chirpwidth : 14ms
chirpampl : 2%
@@ -578,13 +578,13 @@
chirpkurtosis: 1
file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
Beat parameter:
deltaf : 200Hz
contrast: 20%
deltaf : -425Hz
contrast: 5%
am : false
sinewave: true
playback: false
pause : 1000ms
repeats : 6
repeats : 16
Analysis:
sigma : 2ms
adjust: false
@@ -618,16 +618,16 @@
*RePro: FileStimulus
Stimulus:
file : [ /home/efish/stimuli/whitenoise/dennis/InputArr_400hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_400hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_350to400hz_30s.dat, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn50Hz50s0.3.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_250hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat ]
file : [ /home/efish/stimuli/whitenoise/dennis/InputArr_350to400hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_400hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_350to400hz_30s.dat, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn50Hz50s0.3.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_250hz_30s.dat, /home/efish/stimuli/whitenoise/dennis/InputArr_50to100hz_30s.dat ]
name : ~
sigstdev : 0.25
duration : 20000ms
duration : 30000ms
pause : 1000ms
amplsel : [ contrast, absolute ]
contrast : 20%
contrast : 10%
amplitude: 1mV/cm
am : true
repeats : 5
repeats : 1
Additional noise:
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
uppercutoff : 600Hz
@@ -749,7 +749,7 @@
frequencyname : ~
frequencyunit : Hz
frequencyformat: %7.0f
gain : 1.7375
gain : 0.13747
offset : 0
*Attenuator-1
@@ -765,6 +765,6 @@
frequencyname : ~
frequencyunit : Hz
frequencyformat: %7.0f
gain : 0.074344
gain : 0.092205
offset : 0