[nerve] configurations for nerve recordings
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46
nerve/macros.cfg
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46
nerve/macros.cfg
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$DISKSPACE stopsession nobutton keep
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message Diskspace: $(DS=$(df -B 1M . | tail -n 1 | awk '{ print $4 }');
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[ $DS -lt 1000 ] && echo "<h1>! Warning !</h1> <h2>Less than <b>${DS}MB</b>
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of free disk space left!
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</h2> Please make backups and clean up to make room for the next recording!")
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#############################################################################
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$Search fallback keep
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BaselineActivity: repeats=0; isimax=20ms; isistep=0.2ms; auto=always;
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SAM: deltaf=50; contrast=20; duration=400ms; pause=100ms; repeats=0; am=false; freqsel=relative to EOD; sinewave=true;
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#############################################################################
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$Start startsession keep overwrite
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macro Baseline
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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#############################################################################
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$AM
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switch macrosam.cfg
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$DC
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switch macrosdc.cfg
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#############################################################################
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$Calib direct
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CalibEField: am=0;
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$Calib AM
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CalibEField: am=1;
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$Check SAM
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SAM: am=false; freqsel=relative to EOD; repeats=0; contrast=20%;
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deltaf=20Hz; duration=2s;
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#############################################################################
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$Idle
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Pause: repeats=0;
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38
nerve/macrosam.cfg
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38
nerve/macrosam.cfg
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#############################################################################
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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$SAMs AM
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SAM: deltaf=(100..300..10,alternateout,r=3)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: deltaf=(20..90..10,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: deltaf=(2..18..2,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=2s; repeats=4;
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$Chirps EOD
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#Chirps: chirpsize=100Hz; deltaf=(-250,-240,-230,-220,-210,-200,-190,-180,-170,-160,-150,-140,-130,-120,-110,-100,-90,-80,-70,-60,-50,-40,-30,-20,-10,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,210,220,230,240,250); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=60Hz; deltaf=(-250,-200,-150,-100,-80,-60,-40,-20,-10,10,20,40,60,80,100,150,200,250); contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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$Nervetest
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Chirps: chirpsize=100Hz; deltaf=(20); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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$FICurve AM
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FICurve: am=true;
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$Noise AM: contrast=10%
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Pause: duration=200ms; repeats=1
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FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=10%
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FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=5%
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FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=20%
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn200Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn100Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn50Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
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!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn25Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
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#############################################################################
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$DC
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switch macrosdc.cfg
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$Back
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switch macros.cfg
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85
nerve/macrosdc.cfg
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nerve/macrosdc.cfg
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#############################################################################
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$Baseline
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BaselineActivity: repeats=3000; saveeodtrace=true;
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$SAMs 60Hz
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SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05)%; deltaf=60Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=20;
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$SAMs 250Hz
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SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05)%; deltaf=250Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=20;
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$SAMs 40%
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SAM: contrast=40%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=40%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=40%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$SAMs 20%
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SAM: contrast=20%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=20%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=20%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$SAMs 10%
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SAM: contrast=10%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=10%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=10%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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SAM: contrast=10%; deltaf=(-600..-200..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=10%; deltaf=(-190..-20..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=10%; deltaf=(-18..-2..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$SAMs 5%
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SAM: contrast=5%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=5%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=5%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$SAMs 1%
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SAM: contrast=1%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=1%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$SAMs 0.1%
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SAM: contrast=0.1%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
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SAM: contrast=0.1%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
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SAM: contrast=0.1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
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$Chirps A
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Chirps: chirpsize=120Hz; deltaf=60Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=250Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=-60Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=-250Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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$Chirps f
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Chirps: chirpsize=120Hz;
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deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.05%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.02%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
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#$FICurve DC
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#FICurve: am=false;
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#$Noise DC
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#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=10%
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#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=5%
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#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=20%
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#############################################################################
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$All
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macro SAMs 60Hz
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macro SAMs 250Hz
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macro SAMs 40%
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macro SAMs 20%
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macro SAMs 10%
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macro SAMs 5%
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macro SAMs 1%
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macro SAMs 0.1%
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#macro Chirps A
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#macro Chirps f
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$Back
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switch macros.cfg
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177
nerve/relacs.cfg
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177
nerve/relacs.cfg
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*Settings
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General:
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readinterval : 10ms
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processinterval: 50ms
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Plugins:
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pluginpathes : [ base*, misc*, ephys*, efield*, efish*, comedi*, attcs3310* ]
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pluginhelppathes: ~
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controlplugin : [ Session, SpectrumAnalyzer ]
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modelplugin : PUnitModel
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Pathes:
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pathformat : %04Y-%02m-%02d-%a2a
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defaultpath: dry/
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repropath : [ stimuli/repros/, reprodata, stimuli/repros/ ]
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infofile : info.dat
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Save:
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saverelacscore : true
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saverelacsplugins: true
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saverelacslog : true
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saveattenuators : true
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Date/time formats:
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elapsedformat : "%02H:%02M"
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sessiontimeformat: %Hh%02Mmin%02Ssec
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reprotimeformat : %Mmin%02Ssec
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*Metadata
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-Setup-:
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Identifier (Name): invivo1
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Maintainer : Jan Grewe
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Creator : Jan Grewe and Jan Benda
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Location (Room) : "5A17"
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Lab : Neuroethology Lab
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Institute : Institute for Neurobiology
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University : University Tuebingen
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Address : Auf der Morgenstelle 28
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*RELACS
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input data:
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inputsamplerate : 20kHz
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inputtracecapacity : 600s
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inputunipolar : false
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inputtraceid : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
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inputtracescale : [ 100, 2, 10, 1000 ]
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inputtraceunit : [ uV, mV, mV, mV ]
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inputtracedevice : [ ai-1, ai-1, ai-1, ai-1 ]
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inputtracechannel : [ 6, 0, 2, 4 ]
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inputtracereference: [ ground, ground, ground, ground ]
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inputtracegain : [ 1, 2, 2, 3 ]
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inputtracecenter : true
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output data:
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outputtraceid : [ GlobalEField, GlobalEFieldAM ]
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outputtracechannel : [ 1, 0 ]
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outputtracedevice : [ ao-1, ao-1 ]
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outputtracescale : [ 1, 1 ]
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outputtraceunit : [ V, V ]
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outputtracemaxrate : [ 20kHz, 20kHz ]
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outputtracemodality: [ voltage, voltage ]
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*Macros
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file : [ macrosdc.cfg, macrosam.cfg, macros.cfg ]
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mainfile : macros.cfg
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fallbackonreload: true
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*FilterDetectors
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Filter2:
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name : EOD
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filter : EODDetector
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inputtrace : EOD
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save : false
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savesize : false
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savewidth : false
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savemeanrate : true
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savemeansize : true
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savemeanwidth : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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Filter4:
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name : LocalEOD-1
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filter : EODDetector
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inputtrace : LocalEOD-1
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save : false
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savesize : false
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savewidth : false
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savemeanrate : true
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savemeansize : true
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savemeanwidth : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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Filter5:
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name : LocalBeat-1
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filter : BeatDetector
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inputtrace : LocalEOD-1
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save : true
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savesize : true
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savewidth : false
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savemeanrate : true
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savemeansize : true
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savemeanwidth : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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othertrace : ~
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Filter6:
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name : GlobalEFieldStimulus
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filter : EODDetector
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inputtrace : GlobalEFieldStimulus
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save : false
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savesize : false
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savewidth : false
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savemeanrate : true
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savemeansize : true
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savemeanwidth : false
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savemeanquality: false
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plot : true
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buffersize : 300000
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storesize : true
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storewidth : false
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*AudioMonitor
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device: -1
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enable: false
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mute : false
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gain : 1
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*Analog Input Devices
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Device1:
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plugin: ComediAnalogInput
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device: /dev/comedi0
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ident : ai-1
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*Analog Output Devices
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Device1:
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plugin: ComediAnalogOutput
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device: /dev/comedi0
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ident : ao-1
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*Digital I/O Devices
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Device1:
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plugin: ComediDigitalIO
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device: /dev/comedi0
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ident : dio-1
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*Attenuator Devices
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Device1:
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plugin: [ CS3310DIO, AttSim ]
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device: dio-1
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ident : attdev-1
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*Attenuator Interfaces
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Device1:
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plugin : LinearAttenuate
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device : attdev-1
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line : 0
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aodevice : ao-1
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aochannel : 0
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ident : Attenuator-0
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intensityname : amplitude
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intensityunit : mV/cm
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intensityformat: %6.3f
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Device2:
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plugin : LinearAttenuate
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device : attdev-1
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line : 1
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aodevice : ao-1
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aochannel : 1
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ident : Attenuator-1
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intensityname : amplitude
|
||||
intensityunit : mV/cm
|
||||
intensityformat: %6.3f
|
||||
|
||||
487
nerve/relacsplugins.cfg
Normal file
487
nerve/relacsplugins.cfg
Normal file
@ -0,0 +1,487 @@
|
||||
*Metadata
|
||||
Recording:
|
||||
Recording quality: [ good, good, poor, Poor, Fair, Good ]
|
||||
Comment : ~
|
||||
Experimenter : [ Jan Benda & Jan Grewe, Jan Benda & Jan Grewe, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
|
||||
WaterTemperature : 25.6°C
|
||||
WaterConductivity: 225uS/cm
|
||||
Cell:
|
||||
Structure (Recording location): [ Nerve, Nerve, Brain ]
|
||||
Subject:
|
||||
Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
|
||||
Gender (Sex): [ unknown, unknown, Male, Female ]
|
||||
Size : 16.5cm
|
||||
Weight : 11.3g
|
||||
Identifier : "2014lepto30"
|
||||
-Preparation-:
|
||||
Type : [ in vivo, in vivo, slice ]
|
||||
Anaesthesia : true
|
||||
Anaesthetic (Drug) : MS 222
|
||||
AnaestheticDose (Concentration): 125mg/l
|
||||
LocalAnaesthesia : true
|
||||
LocalAnaesthetic (Drug) : Lidocaine
|
||||
Immobilization : true
|
||||
Immobilization (Drug) : Tubocurarin 5mg/L
|
||||
ImmobilizationDose : 60ul
|
||||
|
||||
*Control: Session
|
||||
ephys: true
|
||||
|
||||
*Control: SpectrumAnalyzer
|
||||
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||
origin : [ before end of data, before signal, after signal ]
|
||||
offset : 0ms
|
||||
duration: 1000ms
|
||||
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
fmax : 500Hz
|
||||
decibel : true
|
||||
pmin : -50dB
|
||||
|
||||
*Model: PUnitModel
|
||||
General:
|
||||
EOD:
|
||||
eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
|
||||
eodfreq : 800Hz
|
||||
eodfreqsd : 10Hz
|
||||
eodfreqtau : 1000s
|
||||
eodlocalamplitude : 1mV/cm
|
||||
eodglobalamplitude: 1mV/cm
|
||||
localstimulusgain : 1.00
|
||||
globalstimulusgain: 0.00
|
||||
stimulusgain : 1.00
|
||||
Spikes:
|
||||
voltagescale: 0.5
|
||||
Spike generator:
|
||||
spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
|
||||
noised : 0
|
||||
deltat : 0.05ms
|
||||
integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
|
||||
Voltage-gated current 1 - activation only:
|
||||
gmc : 0
|
||||
emc : -90mV
|
||||
mvmc : -40mV
|
||||
mwmc : 10mV
|
||||
taumc: 10ms
|
||||
Voltage-gated current 2 - activation and inactivation:
|
||||
gmhc : 0
|
||||
emhc : -90mV
|
||||
mvmhc : -40mV
|
||||
mwmhc : 10mV
|
||||
taummhc: 10ms
|
||||
pmmhc : 1
|
||||
hvmhc : -40mV
|
||||
hwmhc : 10mV
|
||||
tauhmhc: 10ms
|
||||
pmhhc : 1
|
||||
|
||||
*Model: Stimulus
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Model: Morris-Lecar
|
||||
General:
|
||||
params: [ Custom, Type I, Type II ]
|
||||
Calcium current:
|
||||
gca : 4nS
|
||||
eca : 120mV
|
||||
mvca: -1.2mV
|
||||
mkca: 18mV
|
||||
Potassium current:
|
||||
gk : 8nS
|
||||
ek : -84mV
|
||||
mvk : 12mV
|
||||
mkk : 17.4mV
|
||||
mphik: 0.067kHz
|
||||
Leak current:
|
||||
gl: 2nS
|
||||
el: -60mV
|
||||
c : 20pF
|
||||
Input:
|
||||
timescale: 10
|
||||
gain : 1
|
||||
offset : 40muA/cm^2
|
||||
|
||||
*Model: Hodgkin-Huxley
|
||||
Sodium current:
|
||||
gna: 120mS/cm^2
|
||||
ena: 50mV
|
||||
Potassium current:
|
||||
gk: 36mS/cm^2
|
||||
ek: -77mV
|
||||
Leak current:
|
||||
gl : 0.3mS/cm^2
|
||||
el : -54.4mV
|
||||
c : 1muF/cm^2
|
||||
phi: 1
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Model: Connor
|
||||
Sodium current:
|
||||
gna: 120mS/cm^2
|
||||
ena: 50mV
|
||||
Potassium current:
|
||||
gk: 20mS/cm^2
|
||||
ek: -77mV
|
||||
A current:
|
||||
gka: 47mS/cm^2
|
||||
eka: -80mV
|
||||
Leak current:
|
||||
gl : 0.3mS/cm^2
|
||||
el : -22mV
|
||||
c : 1muF/cm^2
|
||||
phi: 1
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Model: Wang-Buzsaki
|
||||
Sodium current:
|
||||
gna: 35mS/cm^2
|
||||
ena: 55mV
|
||||
Potassium current:
|
||||
gk: 9mS/cm^2
|
||||
ek: -90mV
|
||||
Leak current:
|
||||
gl : 0.1mS/cm^2
|
||||
el : -65mV
|
||||
c : 1muF/cm^2
|
||||
phi: 5
|
||||
Input:
|
||||
gain : 1
|
||||
offset: 0muA/cm^2
|
||||
|
||||
*Event Detector: EOD
|
||||
threshold : 1.9mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*Event Detector: LocalEOD-1
|
||||
threshold : 3.1mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*Event Detector: LocalBeat-1
|
||||
minthresh: 0.150mV
|
||||
decay : 1sec
|
||||
ratio : 35%
|
||||
|
||||
*Event Detector: GlobalEFieldStimulus
|
||||
threshold : 36.356mV
|
||||
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||
|
||||
*RePro: Pause
|
||||
duration: 1000ms
|
||||
repeats : 0
|
||||
savedata: false
|
||||
|
||||
*RePro: Record
|
||||
duration: 1000ms
|
||||
repeats : 0
|
||||
|
||||
*RePro: SaveTraces
|
||||
General:
|
||||
duration: 1000ms
|
||||
repeats : 0
|
||||
savedata: false
|
||||
split : false
|
||||
Analog input traces:
|
||||
trace-Nerve-1 : true
|
||||
trace-EOD : true
|
||||
trace-LocalEOD-1 : true
|
||||
trace-GlobalEFieldStimulus: true
|
||||
Events:
|
||||
events-EOD : true
|
||||
events-LocalEOD-1 : true
|
||||
events-LocalBeat-1-1 : true
|
||||
events-LocalBeat-1-2 : true
|
||||
events-GlobalEFieldStimulus: true
|
||||
|
||||
*RePro: SetInputGain
|
||||
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||
gainindex : 0
|
||||
interactive: true
|
||||
|
||||
*RePro: SetOutput
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM ]
|
||||
value : 0V
|
||||
interactive: false
|
||||
|
||||
*RePro: Spectrogram
|
||||
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||
width : 100ms
|
||||
step : 0ms
|
||||
tmax : 10s
|
||||
duration: 0s
|
||||
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
powermax: true
|
||||
fmax : 2000Hz
|
||||
pmax : 0dB
|
||||
pmin : -50dB
|
||||
|
||||
*RePro: TransferFunction
|
||||
Stimulus:
|
||||
outtrace : [ GlobalEField, GlobalEFieldAM ]
|
||||
offsetbase: [ custom, current ]
|
||||
offset : 0V
|
||||
amplitude : 1V
|
||||
intensity : 1
|
||||
fmax : 1000Hz
|
||||
duration : 1000ms
|
||||
pause : 1000ms
|
||||
repeats : 100
|
||||
Analysis:
|
||||
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
overlap : true
|
||||
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||
plotstdevs : true
|
||||
plotcoherence: true
|
||||
|
||||
*RePro: Wait
|
||||
absdate: false
|
||||
date : ~
|
||||
days : 0days
|
||||
time : "00:00:00.000"
|
||||
|
||||
*RePro: BridgeTest
|
||||
amplitude: 1V
|
||||
duration : 10ms
|
||||
pause : 100ms
|
||||
average : 10
|
||||
plottrace: true
|
||||
|
||||
*RePro: CapacityCompensation
|
||||
amplitude : 1V
|
||||
duration : 200ms
|
||||
frequency : 100Hz
|
||||
skipcycles: 10
|
||||
pause : 100ms
|
||||
|
||||
*RePro: Iontophoresis
|
||||
durationpos : 1s
|
||||
amplitudepos : 1V
|
||||
pausepos : 1s
|
||||
durationneg : 1s
|
||||
amplitudeneg : 1V
|
||||
pauseneg : 1s
|
||||
fortunes : true
|
||||
fortuneperiod: 10s
|
||||
|
||||
*RePro: Beats
|
||||
Stimulation:
|
||||
duration : 10seconds
|
||||
pause : 20seconds
|
||||
ramp : 0.5seconds
|
||||
deltafrange : "10"
|
||||
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
fixeddf : false
|
||||
amplitude : 1mV/cm
|
||||
repeats : 10
|
||||
fakefish : 0Hz
|
||||
Chirps:
|
||||
generatechirps : false
|
||||
chirpsize : 100Hz
|
||||
chirpwidth : 100ms
|
||||
chirpampl : 0%
|
||||
chirpkurtosis : 1
|
||||
chirpfrequencies: ~
|
||||
chirptimesfile : ~
|
||||
Analysis:
|
||||
before : 1seconds
|
||||
after : 1seconds
|
||||
averagetime : 1seconds
|
||||
showstimulus: false
|
||||
split : false
|
||||
savetraces : false
|
||||
|
||||
*RePro: CalibEField
|
||||
General:
|
||||
reset : false
|
||||
resetval : 0.1
|
||||
am : false
|
||||
beatfreq : 20Hz
|
||||
frequency: 600Hz
|
||||
duration : 600ms
|
||||
pause : 10ms
|
||||
Range:
|
||||
amplsel : [ contrast, amplitude ]
|
||||
targetcontrast : 20%
|
||||
mincontrast : 10%
|
||||
maxcontrast : 40%
|
||||
targetamplitude: 1mV/cm
|
||||
minamplitude : 0.5mV/cm
|
||||
maxamplitude : 2mV/cm
|
||||
numintensities : 10
|
||||
|
||||
*RePro: JAR
|
||||
Stimulation:
|
||||
duration : 10seconds
|
||||
pause : 10seconds
|
||||
ramp : 0.5seconds
|
||||
deltafstep : 2Hz
|
||||
deltafmax : 12Hz
|
||||
deltafmin : -12Hz
|
||||
deltafrange : ~
|
||||
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
repeats : 200
|
||||
Amplitudes:
|
||||
amplsel : [ contrast, absolute ]
|
||||
contrastmax : 20%
|
||||
contrastmin : 10%
|
||||
contraststep: 20%
|
||||
amplmin : 1mV/cm
|
||||
amplmax : 2mV/cm
|
||||
amplstep : 1mV/cm
|
||||
S&timulus:
|
||||
genstim : true
|
||||
sinewave: true
|
||||
file : ~
|
||||
sigstdev: 1
|
||||
warpfile: false
|
||||
fakefish: 0Hz
|
||||
A&nalysis:
|
||||
before : 1seconds
|
||||
after : 8seconds
|
||||
savetraces : true
|
||||
jaraverage : 500ms
|
||||
chirpaverage: 20ms
|
||||
eodsavetime : 1000ms
|
||||
|
||||
*RePro: LinearField
|
||||
duration: 1s
|
||||
|
||||
*RePro: ManualJAR
|
||||
duration : 10seconds
|
||||
ramp : 0.5seconds
|
||||
fakefish : 0Hz
|
||||
before : 1seconds
|
||||
after : 1seconds
|
||||
averagetime: 1seconds
|
||||
split : false
|
||||
savetraces : false
|
||||
|
||||
*RePro: BaselineActivity
|
||||
Timing:
|
||||
duration: 300ms
|
||||
repeats : 0
|
||||
Analysis:
|
||||
isimax : 20ms
|
||||
isistep : 0.2ms
|
||||
ratedt : 0.05ms
|
||||
ratetmax: 2ms
|
||||
Files:
|
||||
eodduration : 2000ms
|
||||
saveeodtrace: true
|
||||
saveeodtimes: false
|
||||
Control:
|
||||
auto : [ always, never, once, always ]
|
||||
adjust: false
|
||||
|
||||
*RePro: Chirps
|
||||
Chirp parameter:
|
||||
nchirps : 10
|
||||
beatpos : 10
|
||||
beatstart : 0.25
|
||||
minspace : 200ms
|
||||
firstspace : 200ms
|
||||
chirpsize : 60Hz
|
||||
chirpwidth : 14ms
|
||||
chirpampl : 2%
|
||||
chirpsel : [ generated, from file ]
|
||||
chirpkurtosis: 1
|
||||
file : ~
|
||||
Beat parameter:
|
||||
deltaf : 10Hz
|
||||
contrast: 20%
|
||||
am : true
|
||||
sinewave: true
|
||||
playback: false
|
||||
pause : 1000ms
|
||||
repeats : 16
|
||||
Analysis:
|
||||
sigma : 1ms
|
||||
adjust: false
|
||||
|
||||
*RePro: FICurve
|
||||
Test-Intensities:
|
||||
duration : 400ms
|
||||
maxintfac : 140%
|
||||
minintfac : 60%
|
||||
nints : 8
|
||||
repeats : 1
|
||||
blockrepeats : 6
|
||||
singlerepeats: 1
|
||||
intshuffle : [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
intincrement : 2
|
||||
Pre-Intensities:
|
||||
preduration : 0ms
|
||||
maxpreintfac : 100%
|
||||
minpreintfac : 100%
|
||||
npreints : 2
|
||||
preintshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||
Control:
|
||||
am : false
|
||||
pause : 1000ms
|
||||
delay : 200ms
|
||||
onsettime : 50ms
|
||||
rangeintincrement: 1
|
||||
minrate : 0Hz
|
||||
minratefrac : 0%
|
||||
adjust : true
|
||||
|
||||
*RePro: FileStimulus
|
||||
Stimulus:
|
||||
file : ~
|
||||
sigstdev : 1
|
||||
duration : 0ms
|
||||
pause : 1000ms
|
||||
amplsel : [ contrast, absolute ]
|
||||
contrast : 20%
|
||||
amplitude: 1mV/cm
|
||||
am : true
|
||||
repeats : 50
|
||||
Additional noise:
|
||||
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
|
||||
uppercutoff : 0Hz
|
||||
lowercutoff : 0Hz
|
||||
noisetau : 0ms
|
||||
noisecontrast: 0%
|
||||
noiseampl : 0mV/cm
|
||||
Analysis:
|
||||
binwidth: 5ms
|
||||
before : 0ms
|
||||
after : 0ms
|
||||
plotpsd : false
|
||||
psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||
adjust : false
|
||||
|
||||
*RePro: SAM
|
||||
Stimulus:
|
||||
duration: 400ms
|
||||
pause : 100ms
|
||||
freqsel : [ absolute, relative to EOD, absolute ]
|
||||
deltaf : 20Hz
|
||||
contrast: 20%
|
||||
repeats : 0
|
||||
am : false
|
||||
sinewave: true
|
||||
Analysis:
|
||||
skip : 0.5Periods
|
||||
ratebins: 10
|
||||
before : 0ms
|
||||
after : 0ms
|
||||
adjust : false
|
||||
|
||||
*Attenuator-0
|
||||
gain : 0.69356
|
||||
offset: 0
|
||||
|
||||
*Attenuator-1
|
||||
gain : 0.062252
|
||||
offset: 0
|
||||
|
||||
Loading…
Reference in New Issue
Block a user