[nerve] configurations for nerve recordings
This commit is contained in:
parent
fc135147d8
commit
186cd1461a
46
nerve/macros.cfg
Normal file
46
nerve/macros.cfg
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
$DISKSPACE stopsession nobutton keep
|
||||||
|
message Diskspace: $(DS=$(df -B 1M . | tail -n 1 | awk '{ print $4 }');
|
||||||
|
[ $DS -lt 1000 ] && echo "<h1>! Warning !</h1> <h2>Less than <b>${DS}MB</b>
|
||||||
|
of free disk space left!
|
||||||
|
</h2> Please make backups and clean up to make room for the next recording!")
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$Search fallback keep
|
||||||
|
BaselineActivity: repeats=0; isimax=20ms; isistep=0.2ms; auto=always;
|
||||||
|
SAM: deltaf=50; contrast=20; duration=400ms; pause=100ms; repeats=0; am=false; freqsel=relative to EOD; sinewave=true;
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$Start startsession keep overwrite
|
||||||
|
macro Baseline
|
||||||
|
|
||||||
|
$Baseline
|
||||||
|
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$AM
|
||||||
|
switch macrosam.cfg
|
||||||
|
|
||||||
|
$DC
|
||||||
|
switch macrosdc.cfg
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$Calib direct
|
||||||
|
CalibEField: am=0;
|
||||||
|
|
||||||
|
$Calib AM
|
||||||
|
CalibEField: am=1;
|
||||||
|
|
||||||
|
$Check SAM
|
||||||
|
SAM: am=false; freqsel=relative to EOD; repeats=0; contrast=20%;
|
||||||
|
deltaf=20Hz; duration=2s;
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
|
||||||
|
$Idle
|
||||||
|
Pause: repeats=0;
|
||||||
|
|
||||||
38
nerve/macrosam.cfg
Normal file
38
nerve/macrosam.cfg
Normal file
@ -0,0 +1,38 @@
|
|||||||
|
#############################################################################
|
||||||
|
$Baseline
|
||||||
|
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||||
|
|
||||||
|
$SAMs AM
|
||||||
|
SAM: deltaf=(100..300..10,alternateout,r=3)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: deltaf=(20..90..10,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: deltaf=(2..18..2,alternateout,r=2)Hz; am=true; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$Chirps EOD
|
||||||
|
#Chirps: chirpsize=100Hz; deltaf=(-250,-240,-230,-220,-210,-200,-190,-180,-170,-160,-150,-140,-130,-120,-110,-100,-90,-80,-70,-60,-50,-40,-30,-20,-10,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,210,220,230,240,250); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=60Hz; deltaf=(-250,-200,-150,-100,-80,-60,-40,-20,-10,10,20,40,60,80,100,150,200,250); contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
|
||||||
|
$Nervetest
|
||||||
|
Chirps: chirpsize=100Hz; deltaf=(20); contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
|
||||||
|
$FICurve AM
|
||||||
|
FICurve: am=true;
|
||||||
|
|
||||||
|
$Noise AM: contrast=10%
|
||||||
|
Pause: duration=200ms; repeats=1
|
||||||
|
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=10%
|
||||||
|
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=5%
|
||||||
|
FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=20%
|
||||||
|
|
||||||
|
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn300Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||||
|
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn200Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||||
|
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn100Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||||
|
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn50Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||||
|
!FileStimulus: file=/home/efish/stimuli/whitenoise/gwn25Hz10s0.3.dat; sigstdev=0.3; am=true; contrast=$contrast
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$DC
|
||||||
|
switch macrosdc.cfg
|
||||||
|
|
||||||
|
$Back
|
||||||
|
switch macros.cfg
|
||||||
85
nerve/macrosdc.cfg
Normal file
85
nerve/macrosdc.cfg
Normal file
@ -0,0 +1,85 @@
|
|||||||
|
#############################################################################
|
||||||
|
$Baseline
|
||||||
|
BaselineActivity: repeats=3000; saveeodtrace=true;
|
||||||
|
|
||||||
|
$SAMs 60Hz
|
||||||
|
SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05)%; deltaf=60Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=20;
|
||||||
|
|
||||||
|
$SAMs 250Hz
|
||||||
|
SAM: contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1, 0.05)%; deltaf=250Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=20;
|
||||||
|
|
||||||
|
$SAMs 40%
|
||||||
|
SAM: contrast=40%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=40%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=40%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$SAMs 20%
|
||||||
|
SAM: contrast=20%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=20%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=20%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$SAMs 10%
|
||||||
|
SAM: contrast=10%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=10%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=10%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
SAM: contrast=10%; deltaf=(-600..-200..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=10%; deltaf=(-190..-20..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=10%; deltaf=(-18..-2..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$SAMs 5%
|
||||||
|
SAM: contrast=5%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=5%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=5%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$SAMs 1%
|
||||||
|
SAM: contrast=1%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=1%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$SAMs 0.1%
|
||||||
|
SAM: contrast=0.1%; deltaf=(200..600..20,alternateout,r=3)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=2;
|
||||||
|
SAM: contrast=0.1%; deltaf=(20..190..10,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=1s; repeats=4;
|
||||||
|
SAM: contrast=0.1%; deltaf=(2..18..2,alternateout,r=2)Hz; am=false; freqsel=relative to EOD; duration=2s; repeats=4;
|
||||||
|
|
||||||
|
$Chirps A
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=60Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=250Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=-60Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=-250Hz; contrast=(40, 20, 10, 5, 2.5, 1, 0.5, 0.2, 0.1)%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
|
||||||
|
$Chirps f
|
||||||
|
Chirps: chirpsize=120Hz;
|
||||||
|
deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=20%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=10%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.5%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.1%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.05%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
#Chirps: chirpsize=120Hz; deltaf=(10,20,30,40,50,60,80,100,120,140,160,200,250,300,350,400,450,500,-10,-20,-30,-40,-50,-60,-80,-100,-120,-140,-160,-200,-250,-300,-350,-400,-450,-500)Hz; contrast=0.02%; chirpwidth=14ms; chirpampl=2%; repeats=16; am=true; sinewave=true; playback=false
|
||||||
|
|
||||||
|
#$FICurve DC
|
||||||
|
#FICurve: am=false;
|
||||||
|
|
||||||
|
#$Noise DC
|
||||||
|
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=10%
|
||||||
|
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=5%
|
||||||
|
#FileStimulus: file=/home/efish/stimuli/whitenoise/gwn150Hz10s0.3.dat; sigstdev=0.3; am=false; contrast=20%
|
||||||
|
|
||||||
|
|
||||||
|
#############################################################################
|
||||||
|
$All
|
||||||
|
macro SAMs 60Hz
|
||||||
|
macro SAMs 250Hz
|
||||||
|
macro SAMs 40%
|
||||||
|
macro SAMs 20%
|
||||||
|
macro SAMs 10%
|
||||||
|
macro SAMs 5%
|
||||||
|
macro SAMs 1%
|
||||||
|
macro SAMs 0.1%
|
||||||
|
#macro Chirps A
|
||||||
|
#macro Chirps f
|
||||||
|
|
||||||
|
|
||||||
|
$Back
|
||||||
|
switch macros.cfg
|
||||||
177
nerve/relacs.cfg
Normal file
177
nerve/relacs.cfg
Normal file
@ -0,0 +1,177 @@
|
|||||||
|
*Settings
|
||||||
|
General:
|
||||||
|
readinterval : 10ms
|
||||||
|
processinterval: 50ms
|
||||||
|
Plugins:
|
||||||
|
pluginpathes : [ base*, misc*, ephys*, efield*, efish*, comedi*, attcs3310* ]
|
||||||
|
pluginhelppathes: ~
|
||||||
|
controlplugin : [ Session, SpectrumAnalyzer ]
|
||||||
|
modelplugin : PUnitModel
|
||||||
|
Pathes:
|
||||||
|
pathformat : %04Y-%02m-%02d-%a2a
|
||||||
|
defaultpath: dry/
|
||||||
|
repropath : [ stimuli/repros/, reprodata, stimuli/repros/ ]
|
||||||
|
infofile : info.dat
|
||||||
|
Save:
|
||||||
|
saverelacscore : true
|
||||||
|
saverelacsplugins: true
|
||||||
|
saverelacslog : true
|
||||||
|
saveattenuators : true
|
||||||
|
Date/time formats:
|
||||||
|
elapsedformat : "%02H:%02M"
|
||||||
|
sessiontimeformat: %Hh%02Mmin%02Ssec
|
||||||
|
reprotimeformat : %Mmin%02Ssec
|
||||||
|
|
||||||
|
*Metadata
|
||||||
|
-Setup-:
|
||||||
|
Identifier (Name): invivo1
|
||||||
|
Maintainer : Jan Grewe
|
||||||
|
Creator : Jan Grewe and Jan Benda
|
||||||
|
Location (Room) : "5A17"
|
||||||
|
Lab : Neuroethology Lab
|
||||||
|
Institute : Institute for Neurobiology
|
||||||
|
University : University Tuebingen
|
||||||
|
Address : Auf der Morgenstelle 28
|
||||||
|
|
||||||
|
*RELACS
|
||||||
|
input data:
|
||||||
|
inputsamplerate : 20kHz
|
||||||
|
inputtracecapacity : 600s
|
||||||
|
inputunipolar : false
|
||||||
|
inputtraceid : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
inputtracescale : [ 100, 2, 10, 1000 ]
|
||||||
|
inputtraceunit : [ uV, mV, mV, mV ]
|
||||||
|
inputtracedevice : [ ai-1, ai-1, ai-1, ai-1 ]
|
||||||
|
inputtracechannel : [ 6, 0, 2, 4 ]
|
||||||
|
inputtracereference: [ ground, ground, ground, ground ]
|
||||||
|
inputtracegain : [ 1, 2, 2, 3 ]
|
||||||
|
inputtracecenter : true
|
||||||
|
output data:
|
||||||
|
outputtraceid : [ GlobalEField, GlobalEFieldAM ]
|
||||||
|
outputtracechannel : [ 1, 0 ]
|
||||||
|
outputtracedevice : [ ao-1, ao-1 ]
|
||||||
|
outputtracescale : [ 1, 1 ]
|
||||||
|
outputtraceunit : [ V, V ]
|
||||||
|
outputtracemaxrate : [ 20kHz, 20kHz ]
|
||||||
|
outputtracemodality: [ voltage, voltage ]
|
||||||
|
|
||||||
|
*Macros
|
||||||
|
file : [ macrosdc.cfg, macrosam.cfg, macros.cfg ]
|
||||||
|
mainfile : macros.cfg
|
||||||
|
fallbackonreload: true
|
||||||
|
|
||||||
|
*FilterDetectors
|
||||||
|
Filter2:
|
||||||
|
name : EOD
|
||||||
|
filter : EODDetector
|
||||||
|
inputtrace : EOD
|
||||||
|
save : false
|
||||||
|
savesize : false
|
||||||
|
savewidth : false
|
||||||
|
savemeanrate : true
|
||||||
|
savemeansize : true
|
||||||
|
savemeanwidth : false
|
||||||
|
savemeanquality: false
|
||||||
|
plot : true
|
||||||
|
buffersize : 300000
|
||||||
|
storesize : true
|
||||||
|
storewidth : false
|
||||||
|
Filter4:
|
||||||
|
name : LocalEOD-1
|
||||||
|
filter : EODDetector
|
||||||
|
inputtrace : LocalEOD-1
|
||||||
|
save : false
|
||||||
|
savesize : false
|
||||||
|
savewidth : false
|
||||||
|
savemeanrate : true
|
||||||
|
savemeansize : true
|
||||||
|
savemeanwidth : false
|
||||||
|
savemeanquality: false
|
||||||
|
plot : true
|
||||||
|
buffersize : 300000
|
||||||
|
storesize : true
|
||||||
|
storewidth : false
|
||||||
|
Filter5:
|
||||||
|
name : LocalBeat-1
|
||||||
|
filter : BeatDetector
|
||||||
|
inputtrace : LocalEOD-1
|
||||||
|
save : true
|
||||||
|
savesize : true
|
||||||
|
savewidth : false
|
||||||
|
savemeanrate : true
|
||||||
|
savemeansize : true
|
||||||
|
savemeanwidth : false
|
||||||
|
savemeanquality: false
|
||||||
|
plot : true
|
||||||
|
buffersize : 300000
|
||||||
|
storesize : true
|
||||||
|
storewidth : false
|
||||||
|
othertrace : ~
|
||||||
|
Filter6:
|
||||||
|
name : GlobalEFieldStimulus
|
||||||
|
filter : EODDetector
|
||||||
|
inputtrace : GlobalEFieldStimulus
|
||||||
|
save : false
|
||||||
|
savesize : false
|
||||||
|
savewidth : false
|
||||||
|
savemeanrate : true
|
||||||
|
savemeansize : true
|
||||||
|
savemeanwidth : false
|
||||||
|
savemeanquality: false
|
||||||
|
plot : true
|
||||||
|
buffersize : 300000
|
||||||
|
storesize : true
|
||||||
|
storewidth : false
|
||||||
|
|
||||||
|
*AudioMonitor
|
||||||
|
device: -1
|
||||||
|
enable: false
|
||||||
|
mute : false
|
||||||
|
gain : 1
|
||||||
|
|
||||||
|
*Analog Input Devices
|
||||||
|
Device1:
|
||||||
|
plugin: ComediAnalogInput
|
||||||
|
device: /dev/comedi0
|
||||||
|
ident : ai-1
|
||||||
|
|
||||||
|
*Analog Output Devices
|
||||||
|
Device1:
|
||||||
|
plugin: ComediAnalogOutput
|
||||||
|
device: /dev/comedi0
|
||||||
|
ident : ao-1
|
||||||
|
|
||||||
|
*Digital I/O Devices
|
||||||
|
Device1:
|
||||||
|
plugin: ComediDigitalIO
|
||||||
|
device: /dev/comedi0
|
||||||
|
ident : dio-1
|
||||||
|
|
||||||
|
*Attenuator Devices
|
||||||
|
Device1:
|
||||||
|
plugin: [ CS3310DIO, AttSim ]
|
||||||
|
device: dio-1
|
||||||
|
ident : attdev-1
|
||||||
|
|
||||||
|
*Attenuator Interfaces
|
||||||
|
Device1:
|
||||||
|
plugin : LinearAttenuate
|
||||||
|
device : attdev-1
|
||||||
|
line : 0
|
||||||
|
aodevice : ao-1
|
||||||
|
aochannel : 0
|
||||||
|
ident : Attenuator-0
|
||||||
|
intensityname : amplitude
|
||||||
|
intensityunit : mV/cm
|
||||||
|
intensityformat: %6.3f
|
||||||
|
Device2:
|
||||||
|
plugin : LinearAttenuate
|
||||||
|
device : attdev-1
|
||||||
|
line : 1
|
||||||
|
aodevice : ao-1
|
||||||
|
aochannel : 1
|
||||||
|
ident : Attenuator-1
|
||||||
|
intensityname : amplitude
|
||||||
|
intensityunit : mV/cm
|
||||||
|
intensityformat: %6.3f
|
||||||
|
|
||||||
487
nerve/relacsplugins.cfg
Normal file
487
nerve/relacsplugins.cfg
Normal file
@ -0,0 +1,487 @@
|
|||||||
|
*Metadata
|
||||||
|
Recording:
|
||||||
|
Recording quality: [ good, good, poor, Poor, Fair, Good ]
|
||||||
|
Comment : ~
|
||||||
|
Experimenter : [ Jan Benda & Jan Grewe, Jan Benda & Jan Grewe, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
|
||||||
|
WaterTemperature : 25.6°C
|
||||||
|
WaterConductivity: 225uS/cm
|
||||||
|
Cell:
|
||||||
|
Structure (Recording location): [ Nerve, Nerve, Brain ]
|
||||||
|
Subject:
|
||||||
|
Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
|
||||||
|
Gender (Sex): [ unknown, unknown, Male, Female ]
|
||||||
|
Size : 16.5cm
|
||||||
|
Weight : 11.3g
|
||||||
|
Identifier : "2014lepto30"
|
||||||
|
-Preparation-:
|
||||||
|
Type : [ in vivo, in vivo, slice ]
|
||||||
|
Anaesthesia : true
|
||||||
|
Anaesthetic (Drug) : MS 222
|
||||||
|
AnaestheticDose (Concentration): 125mg/l
|
||||||
|
LocalAnaesthesia : true
|
||||||
|
LocalAnaesthetic (Drug) : Lidocaine
|
||||||
|
Immobilization : true
|
||||||
|
Immobilization (Drug) : Tubocurarin 5mg/L
|
||||||
|
ImmobilizationDose : 60ul
|
||||||
|
|
||||||
|
*Control: Session
|
||||||
|
ephys: true
|
||||||
|
|
||||||
|
*Control: SpectrumAnalyzer
|
||||||
|
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
origin : [ before end of data, before signal, after signal ]
|
||||||
|
offset : 0ms
|
||||||
|
duration: 1000ms
|
||||||
|
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
fmax : 500Hz
|
||||||
|
decibel : true
|
||||||
|
pmin : -50dB
|
||||||
|
|
||||||
|
*Model: PUnitModel
|
||||||
|
General:
|
||||||
|
EOD:
|
||||||
|
eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
|
||||||
|
eodfreq : 800Hz
|
||||||
|
eodfreqsd : 10Hz
|
||||||
|
eodfreqtau : 1000s
|
||||||
|
eodlocalamplitude : 1mV/cm
|
||||||
|
eodglobalamplitude: 1mV/cm
|
||||||
|
localstimulusgain : 1.00
|
||||||
|
globalstimulusgain: 0.00
|
||||||
|
stimulusgain : 1.00
|
||||||
|
Spikes:
|
||||||
|
voltagescale: 0.5
|
||||||
|
Spike generator:
|
||||||
|
spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
|
||||||
|
noised : 0
|
||||||
|
deltat : 0.05ms
|
||||||
|
integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
|
||||||
|
Voltage-gated current 1 - activation only:
|
||||||
|
gmc : 0
|
||||||
|
emc : -90mV
|
||||||
|
mvmc : -40mV
|
||||||
|
mwmc : 10mV
|
||||||
|
taumc: 10ms
|
||||||
|
Voltage-gated current 2 - activation and inactivation:
|
||||||
|
gmhc : 0
|
||||||
|
emhc : -90mV
|
||||||
|
mvmhc : -40mV
|
||||||
|
mwmhc : 10mV
|
||||||
|
taummhc: 10ms
|
||||||
|
pmmhc : 1
|
||||||
|
hvmhc : -40mV
|
||||||
|
hwmhc : 10mV
|
||||||
|
tauhmhc: 10ms
|
||||||
|
pmhhc : 1
|
||||||
|
|
||||||
|
*Model: Stimulus
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Morris-Lecar
|
||||||
|
General:
|
||||||
|
params: [ Custom, Type I, Type II ]
|
||||||
|
Calcium current:
|
||||||
|
gca : 4nS
|
||||||
|
eca : 120mV
|
||||||
|
mvca: -1.2mV
|
||||||
|
mkca: 18mV
|
||||||
|
Potassium current:
|
||||||
|
gk : 8nS
|
||||||
|
ek : -84mV
|
||||||
|
mvk : 12mV
|
||||||
|
mkk : 17.4mV
|
||||||
|
mphik: 0.067kHz
|
||||||
|
Leak current:
|
||||||
|
gl: 2nS
|
||||||
|
el: -60mV
|
||||||
|
c : 20pF
|
||||||
|
Input:
|
||||||
|
timescale: 10
|
||||||
|
gain : 1
|
||||||
|
offset : 40muA/cm^2
|
||||||
|
|
||||||
|
*Model: Hodgkin-Huxley
|
||||||
|
Sodium current:
|
||||||
|
gna: 120mS/cm^2
|
||||||
|
ena: 50mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 36mS/cm^2
|
||||||
|
ek: -77mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.3mS/cm^2
|
||||||
|
el : -54.4mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 1
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Connor
|
||||||
|
Sodium current:
|
||||||
|
gna: 120mS/cm^2
|
||||||
|
ena: 50mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 20mS/cm^2
|
||||||
|
ek: -77mV
|
||||||
|
A current:
|
||||||
|
gka: 47mS/cm^2
|
||||||
|
eka: -80mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.3mS/cm^2
|
||||||
|
el : -22mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 1
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Model: Wang-Buzsaki
|
||||||
|
Sodium current:
|
||||||
|
gna: 35mS/cm^2
|
||||||
|
ena: 55mV
|
||||||
|
Potassium current:
|
||||||
|
gk: 9mS/cm^2
|
||||||
|
ek: -90mV
|
||||||
|
Leak current:
|
||||||
|
gl : 0.1mS/cm^2
|
||||||
|
el : -65mV
|
||||||
|
c : 1muF/cm^2
|
||||||
|
phi: 5
|
||||||
|
Input:
|
||||||
|
gain : 1
|
||||||
|
offset: 0muA/cm^2
|
||||||
|
|
||||||
|
*Event Detector: EOD
|
||||||
|
threshold : 1.9mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*Event Detector: LocalEOD-1
|
||||||
|
threshold : 3.1mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*Event Detector: LocalBeat-1
|
||||||
|
minthresh: 0.150mV
|
||||||
|
decay : 1sec
|
||||||
|
ratio : 35%
|
||||||
|
|
||||||
|
*Event Detector: GlobalEFieldStimulus
|
||||||
|
threshold : 36.356mV
|
||||||
|
interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
|
||||||
|
|
||||||
|
*RePro: Pause
|
||||||
|
duration: 1000ms
|
||||||
|
repeats : 0
|
||||||
|
savedata: false
|
||||||
|
|
||||||
|
*RePro: Record
|
||||||
|
duration: 1000ms
|
||||||
|
repeats : 0
|
||||||
|
|
||||||
|
*RePro: SaveTraces
|
||||||
|
General:
|
||||||
|
duration: 1000ms
|
||||||
|
repeats : 0
|
||||||
|
savedata: false
|
||||||
|
split : false
|
||||||
|
Analog input traces:
|
||||||
|
trace-Nerve-1 : true
|
||||||
|
trace-EOD : true
|
||||||
|
trace-LocalEOD-1 : true
|
||||||
|
trace-GlobalEFieldStimulus: true
|
||||||
|
Events:
|
||||||
|
events-EOD : true
|
||||||
|
events-LocalEOD-1 : true
|
||||||
|
events-LocalBeat-1-1 : true
|
||||||
|
events-LocalBeat-1-2 : true
|
||||||
|
events-GlobalEFieldStimulus: true
|
||||||
|
|
||||||
|
*RePro: SetInputGain
|
||||||
|
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
gainindex : 0
|
||||||
|
interactive: true
|
||||||
|
|
||||||
|
*RePro: SetOutput
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM ]
|
||||||
|
value : 0V
|
||||||
|
interactive: false
|
||||||
|
|
||||||
|
*RePro: Spectrogram
|
||||||
|
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
width : 100ms
|
||||||
|
step : 0ms
|
||||||
|
tmax : 10s
|
||||||
|
duration: 0s
|
||||||
|
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
powermax: true
|
||||||
|
fmax : 2000Hz
|
||||||
|
pmax : 0dB
|
||||||
|
pmin : -50dB
|
||||||
|
|
||||||
|
*RePro: TransferFunction
|
||||||
|
Stimulus:
|
||||||
|
outtrace : [ GlobalEField, GlobalEFieldAM ]
|
||||||
|
offsetbase: [ custom, current ]
|
||||||
|
offset : 0V
|
||||||
|
amplitude : 1V
|
||||||
|
intensity : 1
|
||||||
|
fmax : 1000Hz
|
||||||
|
duration : 1000ms
|
||||||
|
pause : 1000ms
|
||||||
|
repeats : 100
|
||||||
|
Analysis:
|
||||||
|
intrace : [ Nerve-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
|
||||||
|
size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
overlap : true
|
||||||
|
window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
|
||||||
|
plotstdevs : true
|
||||||
|
plotcoherence: true
|
||||||
|
|
||||||
|
*RePro: Wait
|
||||||
|
absdate: false
|
||||||
|
date : ~
|
||||||
|
days : 0days
|
||||||
|
time : "00:00:00.000"
|
||||||
|
|
||||||
|
*RePro: BridgeTest
|
||||||
|
amplitude: 1V
|
||||||
|
duration : 10ms
|
||||||
|
pause : 100ms
|
||||||
|
average : 10
|
||||||
|
plottrace: true
|
||||||
|
|
||||||
|
*RePro: CapacityCompensation
|
||||||
|
amplitude : 1V
|
||||||
|
duration : 200ms
|
||||||
|
frequency : 100Hz
|
||||||
|
skipcycles: 10
|
||||||
|
pause : 100ms
|
||||||
|
|
||||||
|
*RePro: Iontophoresis
|
||||||
|
durationpos : 1s
|
||||||
|
amplitudepos : 1V
|
||||||
|
pausepos : 1s
|
||||||
|
durationneg : 1s
|
||||||
|
amplitudeneg : 1V
|
||||||
|
pauseneg : 1s
|
||||||
|
fortunes : true
|
||||||
|
fortuneperiod: 10s
|
||||||
|
|
||||||
|
*RePro: Beats
|
||||||
|
Stimulation:
|
||||||
|
duration : 10seconds
|
||||||
|
pause : 20seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
deltafrange : "10"
|
||||||
|
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
fixeddf : false
|
||||||
|
amplitude : 1mV/cm
|
||||||
|
repeats : 10
|
||||||
|
fakefish : 0Hz
|
||||||
|
Chirps:
|
||||||
|
generatechirps : false
|
||||||
|
chirpsize : 100Hz
|
||||||
|
chirpwidth : 100ms
|
||||||
|
chirpampl : 0%
|
||||||
|
chirpkurtosis : 1
|
||||||
|
chirpfrequencies: ~
|
||||||
|
chirptimesfile : ~
|
||||||
|
Analysis:
|
||||||
|
before : 1seconds
|
||||||
|
after : 1seconds
|
||||||
|
averagetime : 1seconds
|
||||||
|
showstimulus: false
|
||||||
|
split : false
|
||||||
|
savetraces : false
|
||||||
|
|
||||||
|
*RePro: CalibEField
|
||||||
|
General:
|
||||||
|
reset : false
|
||||||
|
resetval : 0.1
|
||||||
|
am : false
|
||||||
|
beatfreq : 20Hz
|
||||||
|
frequency: 600Hz
|
||||||
|
duration : 600ms
|
||||||
|
pause : 10ms
|
||||||
|
Range:
|
||||||
|
amplsel : [ contrast, amplitude ]
|
||||||
|
targetcontrast : 20%
|
||||||
|
mincontrast : 10%
|
||||||
|
maxcontrast : 40%
|
||||||
|
targetamplitude: 1mV/cm
|
||||||
|
minamplitude : 0.5mV/cm
|
||||||
|
maxamplitude : 2mV/cm
|
||||||
|
numintensities : 10
|
||||||
|
|
||||||
|
*RePro: JAR
|
||||||
|
Stimulation:
|
||||||
|
duration : 10seconds
|
||||||
|
pause : 10seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
deltafstep : 2Hz
|
||||||
|
deltafmax : 12Hz
|
||||||
|
deltafmin : -12Hz
|
||||||
|
deltafrange : ~
|
||||||
|
deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
repeats : 200
|
||||||
|
Amplitudes:
|
||||||
|
amplsel : [ contrast, absolute ]
|
||||||
|
contrastmax : 20%
|
||||||
|
contrastmin : 10%
|
||||||
|
contraststep: 20%
|
||||||
|
amplmin : 1mV/cm
|
||||||
|
amplmax : 2mV/cm
|
||||||
|
amplstep : 1mV/cm
|
||||||
|
S&timulus:
|
||||||
|
genstim : true
|
||||||
|
sinewave: true
|
||||||
|
file : ~
|
||||||
|
sigstdev: 1
|
||||||
|
warpfile: false
|
||||||
|
fakefish: 0Hz
|
||||||
|
A&nalysis:
|
||||||
|
before : 1seconds
|
||||||
|
after : 8seconds
|
||||||
|
savetraces : true
|
||||||
|
jaraverage : 500ms
|
||||||
|
chirpaverage: 20ms
|
||||||
|
eodsavetime : 1000ms
|
||||||
|
|
||||||
|
*RePro: LinearField
|
||||||
|
duration: 1s
|
||||||
|
|
||||||
|
*RePro: ManualJAR
|
||||||
|
duration : 10seconds
|
||||||
|
ramp : 0.5seconds
|
||||||
|
fakefish : 0Hz
|
||||||
|
before : 1seconds
|
||||||
|
after : 1seconds
|
||||||
|
averagetime: 1seconds
|
||||||
|
split : false
|
||||||
|
savetraces : false
|
||||||
|
|
||||||
|
*RePro: BaselineActivity
|
||||||
|
Timing:
|
||||||
|
duration: 300ms
|
||||||
|
repeats : 0
|
||||||
|
Analysis:
|
||||||
|
isimax : 20ms
|
||||||
|
isistep : 0.2ms
|
||||||
|
ratedt : 0.05ms
|
||||||
|
ratetmax: 2ms
|
||||||
|
Files:
|
||||||
|
eodduration : 2000ms
|
||||||
|
saveeodtrace: true
|
||||||
|
saveeodtimes: false
|
||||||
|
Control:
|
||||||
|
auto : [ always, never, once, always ]
|
||||||
|
adjust: false
|
||||||
|
|
||||||
|
*RePro: Chirps
|
||||||
|
Chirp parameter:
|
||||||
|
nchirps : 10
|
||||||
|
beatpos : 10
|
||||||
|
beatstart : 0.25
|
||||||
|
minspace : 200ms
|
||||||
|
firstspace : 200ms
|
||||||
|
chirpsize : 60Hz
|
||||||
|
chirpwidth : 14ms
|
||||||
|
chirpampl : 2%
|
||||||
|
chirpsel : [ generated, from file ]
|
||||||
|
chirpkurtosis: 1
|
||||||
|
file : ~
|
||||||
|
Beat parameter:
|
||||||
|
deltaf : 10Hz
|
||||||
|
contrast: 20%
|
||||||
|
am : true
|
||||||
|
sinewave: true
|
||||||
|
playback: false
|
||||||
|
pause : 1000ms
|
||||||
|
repeats : 16
|
||||||
|
Analysis:
|
||||||
|
sigma : 1ms
|
||||||
|
adjust: false
|
||||||
|
|
||||||
|
*RePro: FICurve
|
||||||
|
Test-Intensities:
|
||||||
|
duration : 400ms
|
||||||
|
maxintfac : 140%
|
||||||
|
minintfac : 60%
|
||||||
|
nints : 8
|
||||||
|
repeats : 1
|
||||||
|
blockrepeats : 6
|
||||||
|
singlerepeats: 1
|
||||||
|
intshuffle : [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
intincrement : 2
|
||||||
|
Pre-Intensities:
|
||||||
|
preduration : 0ms
|
||||||
|
maxpreintfac : 100%
|
||||||
|
minpreintfac : 100%
|
||||||
|
npreints : 2
|
||||||
|
preintshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
|
||||||
|
Control:
|
||||||
|
am : false
|
||||||
|
pause : 1000ms
|
||||||
|
delay : 200ms
|
||||||
|
onsettime : 50ms
|
||||||
|
rangeintincrement: 1
|
||||||
|
minrate : 0Hz
|
||||||
|
minratefrac : 0%
|
||||||
|
adjust : true
|
||||||
|
|
||||||
|
*RePro: FileStimulus
|
||||||
|
Stimulus:
|
||||||
|
file : ~
|
||||||
|
sigstdev : 1
|
||||||
|
duration : 0ms
|
||||||
|
pause : 1000ms
|
||||||
|
amplsel : [ contrast, absolute ]
|
||||||
|
contrast : 20%
|
||||||
|
amplitude: 1mV/cm
|
||||||
|
am : true
|
||||||
|
repeats : 50
|
||||||
|
Additional noise:
|
||||||
|
noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
|
||||||
|
uppercutoff : 0Hz
|
||||||
|
lowercutoff : 0Hz
|
||||||
|
noisetau : 0ms
|
||||||
|
noisecontrast: 0%
|
||||||
|
noiseampl : 0mV/cm
|
||||||
|
Analysis:
|
||||||
|
binwidth: 5ms
|
||||||
|
before : 0ms
|
||||||
|
after : 0ms
|
||||||
|
plotpsd : false
|
||||||
|
psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
|
||||||
|
adjust : false
|
||||||
|
|
||||||
|
*RePro: SAM
|
||||||
|
Stimulus:
|
||||||
|
duration: 400ms
|
||||||
|
pause : 100ms
|
||||||
|
freqsel : [ absolute, relative to EOD, absolute ]
|
||||||
|
deltaf : 20Hz
|
||||||
|
contrast: 20%
|
||||||
|
repeats : 0
|
||||||
|
am : false
|
||||||
|
sinewave: true
|
||||||
|
Analysis:
|
||||||
|
skip : 0.5Periods
|
||||||
|
ratebins: 10
|
||||||
|
before : 0ms
|
||||||
|
after : 0ms
|
||||||
|
adjust : false
|
||||||
|
|
||||||
|
*Attenuator-0
|
||||||
|
gain : 0.69356
|
||||||
|
offset: 0
|
||||||
|
|
||||||
|
*Attenuator-1
|
||||||
|
gain : 0.062252
|
||||||
|
offset: 0
|
||||||
|
|
||||||
Loading…
Reference in New Issue
Block a user