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scanning of relacs folder preparations

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Jan Grewe 2019-09-09 09:30:44 +02:00
parent ca7d64291d
commit bb352c4a5a
1 changed files with 19 additions and 1 deletions
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20
database.py
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@ -175,6 +175,7 @@ class Repro(dj.Manual):
---- ----
repro_name : varchar(512) repro_name : varchar(512)
settings : varchar(3000) settings : varchar(3000)
run : int
start : float start : float
duration : float duration : float
""" """
@ -198,6 +199,7 @@ class Stimulus(dj.Manual):
stimulus_name : varchar(512) stimulus_name : varchar(512)
mtag_id : varchar(50) mtag_id : varchar(50)
start : float start : float
start_index : int
duration : float duration : float
settings : varchar(3000) settings : varchar(3000)
""" """
@ -369,6 +371,7 @@ def scan_nix_file_for_repros(dataset):
stim["stimulus_id"] = str(uuid.uuid1()) stim["stimulus_id"] = str(uuid.uuid1())
stim["stimulus_index"] = p stim["stimulus_index"] = p
stim["start"] = stim_start stim["start"] = stim_start
stim["start_index"] = -1;
stim["duration"] = stim_duration stim["duration"] = stim_duration
stim["settings"] = settings stim["settings"] = settings
stim["mtag_id"] = mt.id stim["mtag_id"] = mt.id
@ -380,7 +383,22 @@ def scan_nix_file_for_repros(dataset):
def scan_folder_for_repros(dataset): def scan_folder_for_repros(dataset):
print("No nix-file, scanning directory!")
repro_settings = ut.read_stimuli_file(dataset["data_source"])
for i, rs in enumerate(repro_settings):
rp = Repro.get_template_tuple()
rp["run"] = rs["Run"]
rp["repro_name"] = rs["RePro"]
rp["dataset_id"] = dataset["dataset_id"]
rp["repro_id"] = t.name
settings = t.metadata.find_sections(lambda x: "settings" in x.type)
if len(settings) > 0:
rp["settings"] = ut.nix_metadata_to_yaml(settings[0])
else:
rp["settings"] = ut.nix_metadata_to_yaml(t.metadata)
rp["start"] = t.position[0]
rp["duration"] = t.extent[0]
Repro.insert1(rp, skip_duplicates=True)
pass pass