updated model full

model_full.py

@@ -4,67 +4,77 @@ def model_full():
 
     plot_style()
     default_figsize(column=2, length=2.3)
-    grid = gridspec.GridSpec(1, 2, wspace=0.6, bottom = 0.1,hspace=0.15, top=0.95, left=0.075, right=0.87)
+    grid = gridspec.GridSpec(1, 1, wspace=0.6, bottom = 0.1,hspace=0.15, top=0.95, left=0.075, right=0.87)
 
     axes = []
     ##################################
     # model part
     ls = '--'
     lw = 0.5
-    ax = plt.subplot(grid[1])
+    ax = plt.subplot(grid[0])
 
     axes.append(ax)
 
     perc,im,stack_final  = plt_model_big(ax, ls = ls, lw = 0.5)
+    fr_waves = 139
+    fr_noise = 120
+    f1 = 33
+    f2 = 139
+
+    #embed()
+    ax.plot(fr_noise * f1/fr_waves, fr_noise*f2/fr_waves, 'o', ms = 5, markeredgecolor = 'white', markerfacecolor="None")
+    ax.plot(fr_noise * f1 / fr_waves, -fr_noise * f2 / fr_waves, 'o', ms = 5, markeredgecolor='white', markerfacecolor="None")
 
     # if len(cbar) > 0:
     ###############################
     # data part
 
 
-    ax = plt.subplot(grid[0])
-    axes.append(ax)
-    cell = '2012-07-03-ak-invivo-1'
-    mat_rev,stack_final_rev = load_stack_data_susept(cell, save_name = version_final(), end = '_revQuadrant_')
-    mat, stack = load_stack_data_susept(cell, save_name=version_final(), end = '')
-    #embed()
-    #try:
-    full_matrix = create_full_matrix2(np.array(mat),np.array(mat_rev))
-    #except:
-    #    print('full matrix something')
-    #    embed()
+    data_extra = False
+    if data_extra:
+        ax = plt.subplot(grid[0])
+        axes.append(ax)
+        cell = '2012-07-03-ak-invivo-1'
+        mat_rev,stack_final_rev = load_stack_data_susept(cell, save_name = version_final(), end = '_revQuadrant_')
+        mat, stack = load_stack_data_susept(cell, save_name=version_final(), end = '')
+        #embed()
+        #try:
+        full_matrix = create_full_matrix2(np.array(mat),np.array(mat_rev))
+        #except:
+        #    print('full matrix something')
+        #    embed()
 
-    stack_final = get_axis_on_full_matrix(full_matrix, mat)
+        stack_final = get_axis_on_full_matrix(full_matrix, mat)
 
-    abs_matrix = np.abs(stack_final)
-    #embed()
-    #if np.
-    abs_matrix, add_nonlin_title, resize_val = rescale_colorbar_and_values(abs_matrix)
+        abs_matrix = np.abs(stack_final)
+        #embed()
+        #if np.
+        abs_matrix, add_nonlin_title, resize_val = rescale_colorbar_and_values(abs_matrix)
 
 
-    ax.axhline(0, color = 'white', linestyle = ls, linewidth = lw)
-    ax.axvline(0, color='white', linestyle = ls, linewidth = lw)
-    im = plt_RAM_perc(ax, perc, abs_matrix)
-    cbar, left, bottom, width, height = colorbar_outside(ax, im, add=5, width=0.01)
+        ax.axhline(0, color = 'white', linestyle = ls, linewidth = lw)
+        ax.axvline(0, color='white', linestyle = ls, linewidth = lw)
+        im = plt_RAM_perc(ax, perc, abs_matrix)
+        cbar, left, bottom, width, height = colorbar_outside(ax, im, add=5, width=0.01)
 
-    set_clim_same_here([im], mats=[abs_matrix], lim_type='up', nr_clim='perc', clims='', percnr=95)
+        set_clim_same_here([im], mats=[abs_matrix], lim_type='up', nr_clim='perc', clims='', percnr=95)
 
-    #clim = im.get_clim()
-    #if clim[1]> 1000:
-    #todo: change clim values with different Hz values
-    #embed()
-    cbar.set_label(nonlin_title(add_nonlin_title = ' ['+add_nonlin_title), rotation=90, labelpad=8)
+        #clim = im.get_clim()
+        #if clim[1]> 1000:
+        #todo: change clim values with different Hz values
+        #embed()
+        cbar.set_label(nonlin_title(add_nonlin_title = ' ['+add_nonlin_title), rotation=90, labelpad=8)
 
-    set_ylabel_arrow(ax, xpos = -0.07, ypos = 0.97)
-    set_xlabel_arrow(ax, xpos=1, ypos=-0.07)
-    '''    eod_fr, stack_spikes = plt_data_suscept_single(ax, cbar_label, cell, cells, f, fig, file_names_exclude, lp, title,
-                                                   width)'''
-    cbar, left, bottom, width, height = colorbar_outside(ax, im, add=5, width=0.01)
+        set_ylabel_arrow(ax, xpos = -0.07, ypos = 0.97)
+        set_xlabel_arrow(ax, xpos=1, ypos=-0.07)
+        '''    eod_fr, stack_spikes = plt_data_suscept_single(ax, cbar_label, cell, cells, f, fig, file_names_exclude, lp, title,
+                                                       width)'''
+        cbar, left, bottom, width, height = colorbar_outside(ax, im, add=5, width=0.01)
 
     #print('finished model_full')
     fig = plt.gcf()
     #axes = plt.gca()
-    fig.tag(axes[::-1], xoffs=-4.5, yoffs=0.4)  # ax_ams[3],
+    #fig.tag(axes[::-1], xoffs=-4.5, yoffs=0.4)  # ax_ams[3],
 
     save_visualization()
 

motivation_spikes_012.csv

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motivation_spikes_base_0.csv

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motivation_spikes_control_01.csv

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motivation_spikes_control_02.csv

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utils_paper.py

@@ -10197,7 +10197,7 @@ def plt_psds_ROC(add_burst_corr, arrays, ax00, ax_ps, cell, color_psd, colors_p,
 
 
 def df2_core(DF1):
-    return '$|\Delta f_{2}|=|f_{1}-f_{EOD}|=%s$' %(np.abs(DF1)) + '\,Hz'
+    return '$|\Delta f_{2}|=|f_{2}-f_{EOD}|=%s$' %(np.abs(DF1)) + '\,Hz'
 
 
 def df1_core(DF2):