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reclassified one ampullary cell

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saschuta 2024-06-18 15:18:04 +02:00
parent 595bcb82b6
commit b74b309307
11 changed files with 1201 additions and 32 deletions
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data/data_overview_mod.csv
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@ -798,8 +798,8 @@
796,2010-08-11-ag-invivo-1, Ampullary,0.4089992224304289,795.7140239829068,0.4222223689051429,454.53785363519495,0.7103792909949956,374438883.57894737,20.0,%,2.0,31.84605,152.5189,0.2999999999999999,FileStimulus_1,gwn150Hz10s0,0,200.0,20.0,0.2282499495429241,92.96951663448452,-0.0001950970700517,original,code,loop,19.0,10.0,2.6786444187164307,62.37271078404954,46.07370400502556,62.37271078404954,46.07370400502556,0.2205389519482339,93.3553768834754,-0.4420967268136434,-0.5698785416211857,18.0,0.6968556762747107,-0.16453345043096,91.92631578947368,-0.0005095877061381,-0.4647439879979832,, Nerve,20000.0, Apteronotus leptorhynchus,747.3900204613092,20.0,0.0,0.0,0.0511928762586215,0.0484577645585778,0.0,0.0,745.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,, Ampullary,0.0,0.0,-0.7564517794100805,0.228249949542924,92.9695166344845,-0.4420967268136435,-0.0002622016566412,0.0,0.0,1.5,0.228249949542924,0.228249949542924,92.9695166344845,0.228249949542924,92.9695166344845,0.221,7.8424147456028255,0.8529840052618238,0.2758006084271575,0.2758006084271575,967.4005959350447,0.0201163413883231,99.13919593628624,99.13919593628624,47.747290124488295,47.747290124488295,0.8684255875016161,0.9633202119048202,1.2401848567884362,0.8084817814838904,0.9633202119048202,1.226935767884486,0.8084817814838904,0.9633202119048202,1.226935767884486,,,,93815.80926357691,52443.77036291375,11785.414083990278,30359.226680358952,14394.48257064225,15066.676103445674,50821.234857810974,93815.80926357691,1.7878774617930064,13.65628013036989,116533.41197879933,116533.41197879933,2.2165875543123312,17.398801621096908,41372.0389006632,0.7878774617930064,6.389454893750775,64089.641615885565,1.2165875543123306,10.13197638447779,42994.57440576596,0.818945085271119,6.687620672513634,65712.17712098832,1.2476551777904428,10.430142163240651,93814.80926357691,0.7878774617930064,12.656280130369892,116532.41197879933,1.2165875543123306,16.398801621096908,,,,,,,,,,,,,,,,,,,,,,,,,,0.6968556762747107,0.6968556762747107,0.2758006084271575,0.2758006084271575,99.13919593628624,99.13919593628624
797,2010-08-11-ai-invivo-1, Ampullary,0.1226997667291286,293.2625720815418,0.1266667106715428,182.5754661242985,0.1065568936492493,217858786.9090909,10.0,%,2.0,16.6404,115.16865,0.2999999999999999,FileStimulus_1,gwn150Hz10s0,0,120.0,20.0,0.2305793961961138,92.95426452410383,-0.0001951146336582,original,code,loop,11.0,10.0,2.589474678039551,39.24859451327245,49.261413082437926,39.24859451327245,49.261413082437926,0.2239513269716129,93.32708348357006,-0.4462245781190479,-0.2928670651211026,10.0,0.4598987905316054,-0.2288483581667959,87.26363636363638,-0.0003789405798249,-0.337257116044222,, Nerve,20000.0, Apteronotus leptorhynchus,746.7373934659091,10.0,0.0,0.0,0.0016596121857546,0.0016559527578318,0.0,0.0,514.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,, Ampullary,0.0,0.0,-0.6217891163337912,0.2305793961961138,92.95426452410383,-0.446224578119048,-0.0004282294189626,0.0,0.0,1.5,0.2305793961961138,0.2305793961961138,92.95426452410383,0.2305793961961138,92.95426452410383,0.225,7.841869708745317,0.7651470153411766,0.2169282391403474,0.2169282391403474,1459.4918632993313,0.0024667993633997,68.72155880419099,68.72155880419099,44.089799878577416,44.08979987857742,1.0112744073842777,1.151021229561454,1.4856255442775348,0.9433358219743254,1.151021229561454,1.4559820678100686,0.9433358219743254,1.151021229561454,1.4559820678100686,,,,367626.3475619043,209981.42510646337,44449.07902988231,114500.8275809768,50337.188377112754,62674.03847747639,205757.12511905143,367626.3475619043,1.748187900074616,10.643955238611015,450327.0812710832,450327.0812710832,2.135074697615252,12.834999358304175,157644.92245544086,0.7481879000746164,4.491161432092111,240345.6561646199,1.1350746976152513,6.682205551785268,161869.22244285286,0.7692691541988815,4.522108386405859,244569.95615203195,1.1561559517395166,6.713152506099018,367625.3475619043,0.7481879000746164,9.643955238611015,450326.0812710832,1.1350746976152513,11.834999358304175,,,,,,,,,,,,,,,,,,,,,,,,,,0.4598987905316054,0.4598987905316054,0.2169282391403474,0.2169282391403474,68.72155880419099,68.72155880419099
798,2010-08-11-ah-invivo-1, Ampullary,0.071574863925325,179.33515125329208,0.0738889145583999,150.81368459053306,0.0621581879620621,111144184.66666669,10.0,%,2.0,31.64210000000001,52.72775000000001,0.3,FileStimulus_1,gwn150Hz10s0,0,70.0,20.0,0.260791039567793,91.03663786231306,-0.0001686060868296,original,code,loop,6.0,10.0,2.5985207557678223,34.587827297799585,51.891821140319344,34.587827297799585,51.891821140319344,0.2462652432666952,91.61844504631487,-0.3112998223613938,-0.4800215292040449,5.0,0.4838581111479341,-0.0803829930728224,75.76666666666667,0.0065999153155383,5.266732421799569,, Nerve,20000.0, Apteronotus leptorhynchus,747.4772135416665,10.0,0.0,0.0,0.001631424378704,0.0016251515041651,0.0,0.0,637.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,, Ampullary,0.0,0.0,-0.5642021431906695,0.260791039567793,91.03663786231306,-0.3112998223613938,-0.000201285102815,0.0,0.0,1.5,0.260791039567793,0.260791039567793,91.03663786231306,0.260791039567793,91.03663786231306,0.247,7.786469037977247,0.5760821096662848,0.1463166358137438,0.1463166358137438,1212.5281512501144,0.0017594837090305,40.35058054692913,40.35058054692913,39.21622532072761,39.21622532072761,0.9518203987388756,1.185915484164947,1.4766309505159867,0.9518203987388756,1.185915484164947,1.4766309505159867,0.9518203987388756,1.185915484164947,1.4766309505159867,,,,313982.22068722,193355.6995277021,35912.44103734272,92510.44811219483,47449.429435744256,54552.52087293151,196745.23990488632,313982.22068722,1.6259605609215644,12.781495425306463,425712.9261490564,425712.9261490564,2.191974211150634,15.812220962135706,120626.52115951786,0.6259605609215645,5.075848515591044,232357.22662135423,1.1919742111506335,8.106574052420287,117236.98078233366,0.6071305289582821,5.049362150869278,228967.68624417004,1.1731441791873514,8.080087687698521,313981.22068722,0.6259605609215645,11.781495425306463,425711.9261490564,1.1919742111506335,14.812220962135706,,,,,,,,,,,,,,,,,,,,,,,,,,0.4838581111479341,0.4838581111479341,0.1463166358137438,0.1463166358137438,40.35058054692913,40.35058054692913
799,2012-04-26-ac, Ampullary,0.127812257009509,717.7842504911522,0.1319444902828571,674.4614293533248,0.027749191054492,1294378775.9183676,2.5,%,2.0,358.37674999999984,862.0978499999991,0.3000000000000003,FileStimulus_1,gwn150Hz10s0,0,500.0,20.0,,,0.001509825917321,original,code,loop,49.0,10.0,0.8035775423049927,18.48379090568781,33.70491020608728,18.48379090568781,33.70491020608728,0.6607602808364842,121.56619401470994,0.1968887172565748,7.6019734937112995,51.0,0.1755419974831546,-0.030572935422323,129.17755102040817,-0.0008631138019334,-1.0469570417452785,, Nerve,20000.0, Apteronotus leptorhynchus,755.7116056743422,2.5,0.0237234947868789,0.0199673815260342,0.0237234947868789,0.0199673815260342,0.0237234947868789,0.0199673815260342,1259.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,, Ampullary,0.0,0.0,3.3843577361764825,0.3948205709794293,123.37529132717992,0.1968887172565748,-9.226223692044763e-05,0.0,0.0,1.5,0.0849740327136188,0.1755419974831546,,,,0.256,8.519613585584638,0.7661546817263817,0.2794437699565895,0.2794437699565895,5030.823963828976,0.0001313971063078,90.22058203362243,90.22058203362243,64.0270451307865,64.0270451307865,2.2082441027810744,2.6259771589669096,3.831959536793689,,,,,,,,,,10472721.709417898,3399806.0823214217,1393441.0417210318,3589504.1234733774,2098828.65998152,2241614.9916246976,2257483.7920202883,10472721.709417898,3.0891523355318102,20.17536687504718,13164701.252207529,13164701.252207529,3.876626479035425,24.96174572446147,7072915.627096478,2.0891523355318107,13.6255678812827,9764895.169886108,2.8766264790354263,18.411946730697,8215237.91739761,2.4341309922256107,17.38913351226686,10907217.46018724,3.2216051357292246,22.17551236168116,10472720.709417898,2.0891523355318107,19.17536687504718,13164700.252207529,2.8766264790354263,23.96174572446147,,,,,,,,,,,,,,,,,,,,,,,,,,0.1755419974831546,0.1755419974831546,0.2794437699565895,0.2794437699565895,90.22058203362243,90.22058203362243
800,2012-04-26-ac, Ampullary,0.0460124125234232,166.11791972534365,0.0475000165018285,104.81767906239271,0.0199794175592342,216698000.5,5.0,%,2.0,862.4108500000001,892.6099999999999,0.3,FileStimulus_2,gwn150Hz10s0,0,90.0,20.0,,,0.001509825917321,original,code,loop,8.0,10.0,0.7928933501243591,31.81732033033313,50.76700781594279,31.81732033033313,50.76700781594279,0.6607602808364837,121.56619401470994,0.1968887172565748,7.601973493711305,56.0,0.2860586922928157,-0.0573791903921241,107.9,-0.0002216586183936,-0.268650245493065,, Nerve,20000.0, Apteronotus leptorhynchus,755.7116056743422,5.0,0.0,0.0,0.0,0.0,0.0,0.0,71.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,, Ampullary,0.0,0.0,3.3843577361764825,0.3948205709794293,123.37529132717992,0.1968887172565748,-9.226223692044763e-05,0.0,0.0,1.5,0.0849740327136188,0.2860586922928157,,,,0.256,7.819758041282841,0.8029786393100088,0.3371793610437289,0.3371793610437289,2992.745340909256,0.0006334624214838,131.00308661153977,131.00308661153977,55.65006706840121,55.65006706840121,1.3638644069953578,1.5030636763694951,1.8860340579444064,,,,,,,,,,1561123.0428962228,847540.3110399491,404509.35769006266,1042016.1054096016,294718.5359148578,354492.9753220787,736242.7702424702,1561123.0428962228,1.818835146321798,5.875999320033946,2039689.7685899632,2039689.7685899632,2.346255689015956,7.294432972979234,713582.7318562735,0.8188351463217982,2.486488009727445,1192149.4575500146,1.3462556890159554,3.904921662672733,824880.2726537522,0.9360820783886822,2.7176929947724835,1303446.9983474931,1.46350262108284,4.136126647717772,1561122.0428962228,0.8188351463217982,4.875999320033947,2039688.7685899632,1.3462556890159554,6.294432972979235,,,,,,,,,,,,,,,,,,,,,,,,,,0.2860586922928157,0.2860586922928157,0.3371793610437289,0.3371793610437289,131.00308661153977,131.00308661153977
799,2012-04-26-ac, Ampullary,0.127812257009509,717.7842504911522,0.1319444902828571,674.4614293533248,0.027749191054492,1294378775.9183676,2.5,%,2.0,358.37674999999984,862.0978499999991,0.3000000000000003,FileStimulus_1,gwn150Hz10s0,0,500.0,20.0,,,0.001509825917321,original,code,loop,49.0,10.0,0.8035775423049927,18.48379090568781,33.70491020608728,18.48379090568781,33.70491020608728,0.6607602808364842,121.56619401470994,0.1968887172565748,7.6019734937112995,51.0,0.1755419974831546,-0.030572935422323,129.17755102040817,-0.0008631138019334,-1.0469570417452785,, Nerve,20000.0, Apteronotus leptorhynchus,755.7116056743422,2.5,0.0237234947868789,0.0199673815260342,0.0237234947868789,0.0199673815260342,0.0237234947868789,0.0199673815260342,1259.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,,Ampullary_problem,0.0,0.0,3.3843577361764825,0.3948205709794293,123.37529132717992,0.1968887172565748,-9.226223692044763e-05,0.0,0.0,1.5,0.0849740327136188,0.1755419974831546,,,,0.256,8.519613585584638,0.7661546817263817,0.2794437699565895,0.2794437699565895,5030.823963828976,0.0001313971063078,90.22058203362243,90.22058203362243,64.0270451307865,64.0270451307865,2.2082441027810744,2.6259771589669096,3.831959536793689,,,,,,,,,,10472721.709417898,3399806.0823214217,1393441.0417210318,3589504.1234733774,2098828.65998152,2241614.9916246976,2257483.7920202883,10472721.709417898,3.0891523355318102,20.17536687504718,13164701.252207529,13164701.252207529,3.876626479035425,24.96174572446147,7072915.627096478,2.0891523355318107,13.6255678812827,9764895.169886108,2.8766264790354263,18.411946730697,8215237.91739761,2.4341309922256107,17.38913351226686,10907217.46018724,3.2216051357292246,22.17551236168116,10472720.709417898,2.0891523355318107,19.17536687504718,13164700.252207529,2.8766264790354263,23.96174572446147,,,,,,,,,,,,,,,,,,,,,,,,,,0.1755419974831546,0.1755419974831546,0.2794437699565895,0.2794437699565895,90.22058203362243,90.22058203362243
800,2012-04-26-ac, Ampullary,0.0460124125234232,166.11791972534365,0.0475000165018285,104.81767906239271,0.0199794175592342,216698000.5,5.0,%,2.0,862.4108500000001,892.6099999999999,0.3,FileStimulus_2,gwn150Hz10s0,0,90.0,20.0,,,0.001509825917321,original,code,loop,8.0,10.0,0.7928933501243591,31.81732033033313,50.76700781594279,31.81732033033313,50.76700781594279,0.6607602808364837,121.56619401470994,0.1968887172565748,7.601973493711305,56.0,0.2860586922928157,-0.0573791903921241,107.9,-0.0002216586183936,-0.268650245493065,, Nerve,20000.0, Apteronotus leptorhynchus,755.7116056743422,5.0,0.0,0.0,0.0,0.0,0.0,0.0,71.0, Ampullary,0.5sec,0.5,gwn150Hz10s0.3,gwn150Hz10s0.3,,Ampullary_problem,0.0,0.0,3.3843577361764825,0.3948205709794293,123.37529132717992,0.1968887172565748,-9.226223692044763e-05,0.0,0.0,1.5,0.0849740327136188,0.2860586922928157,,,,0.256,7.819758041282841,0.8029786393100088,0.3371793610437289,0.3371793610437289,2992.745340909256,0.0006334624214838,131.00308661153977,131.00308661153977,55.65006706840121,55.65006706840121,1.3638644069953578,1.5030636763694951,1.8860340579444064,,,,,,,,,,1561123.0428962228,847540.3110399491,404509.35769006266,1042016.1054096016,294718.5359148578,354492.9753220787,736242.7702424702,1561123.0428962228,1.818835146321798,5.875999320033946,2039689.7685899632,2039689.7685899632,2.346255689015956,7.294432972979234,713582.7318562735,0.8188351463217982,2.486488009727445,1192149.4575500146,1.3462556890159554,3.904921662672733,824880.2726537522,0.9360820783886822,2.7176929947724835,1303446.9983474931,1.46350262108284,4.136126647717772,1561122.0428962228,0.8188351463217982,4.875999320033947,2039688.7685899632,1.3462556890159554,6.294432972979235,,,,,,,,,,,,,,,,,,,,,,,,,,0.2860586922928157,0.2860586922928157,0.3371793610437289,0.3371793610437289,131.00308661153977,131.00308661153977
801,2013-04-16-aa-invivo-1, Ampullary,0.2827867280784004,785.3068157864317,0.2795347540140059,464.3998098111056,0.1131427999982664,1132767631.12,5.0,%,2.0,180.4285,422.8332499999997,0.3000000000000003,FileStimulus_1,gwn150Hz50s0,0,510.0,20.0,,,0.0020155112173839,original,code,loop,51.0,10.0,1.7545323371887207,17.116739589272896,41.32245706539677,17.116739589272896,41.32245706539677,,109.81764705882352,-0.1162914031545726,,50.0,0.2339047084542437,-0.0081311154760654,109.81764705882352,-3.6996195353460855e-05,-0.0407328110841604,, Nerve,20000.0, Apteronotus leptorhynchus,697.0932904411757,5.0,0.0,0.0,0.0,0.0,0.0,0.0,1105.0, Ampullary,0.5sec,0.5,gwn150Hz50s0.3,gwn150Hz50s0.3,, Ampullary,0.0,0.0,8.394604220404101,0.1764105291690905,108.6575624838959,-0.1162914031545727,0.0020155112173839,0.0,0.0,1.5,0.1764105291690905,0.2339047084542437,,,,0.0855,8.180733040227167,0.5739871087211218,0.1571346491777864,0.1571346491777864,2328.021040295313,0.0003832938034584,40.834500670677,40.834500670677,55.79098115961622,55.79098115961622,1.5599053971287549,1.7794975707776934,1.954477364233541,,,,,,,,,,1732416.836521351,929008.9732893902,391083.1827331647,1007430.2787206316,319844.206240192,399541.8527786617,808338.2683983577,1732416.836521351,1.8647200100227463,11.676489841079428,1945638.503412792,1945638.503412792,2.0939723675059043,12.919141519570598,803407.8632319618,0.8647200100227458,5.445802764629441,1016629.530123402,1.093972367505904,6.68845444312062,924078.568122994,0.9941376359090546,5.1987437609771225,1137300.2350144344,1.2233899933922123,6.441395439468303,1732415.836521351,0.8647200100227458,10.676489841079423,1945637.503412792,1.093972367505904,11.919141519570598,,,,,,,,,,,,,,,,,,,,,,,,,,0.2339047084542437,0.2339047084542437,0.1571346491777864,0.1571346491777864,40.834500670677,40.834500670677
802,2012-02-21-ai, P-unit,0.1149413317921106,86.63610599816263,0.1184990998634834,77.45518818077781,0.0287744698003182,240866818.66666663,5.0,%,2.0,31.08890000000001,171.73045000000005,0.2999999999999999,FileStimulus_1,gwn50Hz10s0,0,130.0,20.0,0.0868562425048262,91.83175563579584,-0.000954289620363,original,code,loop,12.0,10.0,12.11334228515625,13.87579476696583,43.63556997155786,13.87579476696583,43.63556997155786,0.0868562425048262,91.83175563579584,-0.0319061476550921,,11.0,0.0803006509828727,-0.0103324012402783,92.56666666666663,-0.0006873984212578,-0.6104097980769749,, Nerve,20000.0, Eigenmannia virescens,300.29296875,5.0,0.0003655206641932,0.0003649196594093,0.0028928564146954,0.0028821392426806,0.0003655206641932,0.0003649196594093,905.0, P-unit,0.5sec,0.5,gwn50Hz10s0.3,gwn50Hz10s0.3,, P-unit,0.0,0.0,-2.644336538026079,0.0868562425048262,91.83175563579584,-0.0319061476550921,-0.000954289620363,0.0,0.0,1.5,0.0868562425048262,0.0881635085765222,91.7666959435282,0.0868562425048262,91.83175563579584,0.076,9.4936630587854,0.3746250167685782,0.1500850564003605,0.1500850564003605,297.1578897863492,5.078544841002148e-05,11.841007890109552,11.841007890109552,45.96863240488314,45.96863240488314,16.235095229996436,22.19874821585813,22.19874821585813,16.235095229996436,22.19874821585813,22.19874821585813,16.235095229996436,22.19874821585813,22.19874821585813,,,,1657413.6720249504,53114.32496407456,18027.645457508184,46439.214698541095,106138.53475692635,363311.6740362268,40548.32994758264,1657413.6720249504,31.146047982178985,101.72268880351828,2092854.2238967884,2092854.2238967884,39.38720538627843,121.31280639381905,1604299.347060876,30.146047982178985,97.76117726618332,2039739.898932714,38.38720538627843,117.35129485648412,1616865.3420773677,30.38211886226352,98.56653601077706,2052305.8939492065,38.62327626636295,118.1566536010778,1657412.6720249504,30.146047982178985,100.72268880351828,2092853.2238967884,38.38720538627843,120.31280639381905,,,,,,,,,,,,,,,,,,,,,,,,,,0.0803006509828727,0.0803006509828727,0.1500850564003605,0.1500850564003605,11.841007890109552,11.841007890109552
803,2012-02-21-ai, P-unit,0.2173471421590132,130.35656012938685,0.2230598948941664,127.3930523874406,0.5305951417707856,264836824.57142857,20.0,%,2.0,194.4037,345.02464999999995,0.2999999999999999,FileStimulus_3,gwn300Hz10s0,0,150.0,20.0,0.0868562425048262,91.83175563579584,-0.000954289620363,original,code,loop,14.0,10.0,12.183097839355469,15.241784588297858,45.82047244971306,15.241784588297858,45.82047244971306,0.0868562425048262,91.83175563579584,-0.0319061476550921,,13.0,0.099143935711852,-0.0061399389664204,88.2142857142857,0.0003351845673807,0.2832309594366995,, Nerve,20000.0, Eigenmannia virescens,300.29296875,20.0,0.0006557290719786,0.0006530900094642,0.003748872040361,0.0037249552831565,0.0006557290719786,0.0006530900094642,872.0, P-unit,0.5sec,0.5,gwn300Hz10s0.3,gwn300Hz10s0.3,, P-unit,0.0,0.0,-2.644336538026079,0.0868562425048262,91.83175563579584,-0.0319061476550921,-0.000954289620363,0.0,0.0,1.5,0.0868562425048262,0.0881635085765222,91.7666959435282,0.0868562425048262,91.83175563579584,0.076,9.151503573750574,0.4086038354600529,0.074705180522665,0.074705180522665,634.6719050835076,0.0024841463883262,35.28049590296767,35.28049590296767,43.49845551767536,43.49845551767536,2.7774787281084268,4.055290242533087,4.055290242533087,2.7774787281084268,4.055290242533087,4.055290242533087,2.7774787281084268,4.055290242533087,4.055290242533087,0.7162906801263222,0.828303759151207,2.2395542560149098,283401.08612884127,96337.11000100875,17708.725415952224,45617.67667149293,41522.86277183312,53722.62265042764,95449.4898542484,283401.08612884127,2.941037651846503,17.46214411796072,426736.6896746577,426736.6896746577,4.431925126271662,26.014220350565147,187063.9761278325,1.941037651846504,11.59658306722214,330399.5796736488,3.431925126271661,20.14865929982657,187951.59627459288,1.9503414178068887,11.661302795492446,331287.19982040924,3.4412288922320475,20.21337902809688,283400.08612884127,1.941037651846504,16.46214411796072,426735.6896746577,3.431925126271661,25.014220350565147,1.0125526574471917,4.516686749072943,4.516686749072943,,,,,,,,,,,,,,,,,,,,,,,0.099143935711852,0.099143935711852,0.074705180522665,0.074705180522665,35.28049590296767,35.28049590296767

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data_overview_mod.py
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@ -188,9 +188,6 @@ def printing_values_data_overview(cell_types, frame_load_sp, scores, species, x_
cells_amp = update_cell_names_to_unify_invivo_nomenclature(cells_amp)
frame_amps = frame_file[frame_file.cell.isin(cells_amp)]
frame_amps.cell.unique()
# ['2012-05-07-ac-invivo-1', '2012-04-26-ae','2012-05-15-ac-invivo-1', '2010-06-21-ac-invivo-1','2010-06-21-am-invivo-1', '2011-09-21-ab-invivo-1']
# embed()
# if len(frame_amps)
#################################################################
# print the corrs
score = scores[c] # 'ser_base',
@ -212,8 +209,7 @@ def printing_values_data_overview(cell_types, frame_load_sp, scores, species, x_
corr, p_value = stats.pearsonr(x_axis, y_axis)
pears_l = label_pearson(corr, p_value, y_axis, n=True)
print(start_name(cell_type_here, species) + ' ' + corr_var + ' to ' + str(score) + pears_l)
# if corr_var == 'ser_first_base':#
# embed()
print('\n')
################################
# cv to fr correlation
@ -342,31 +338,8 @@ def printing_values_data_overview(cell_types, frame_load_sp, scores, species, x_
frame_file = setting_overview_score(frame_load_sp, cell_type_here, f_exclude=False, snippet=None,
min_amp='min', species=species)
print(start_name(cell_type_here, species) + ' nr ' + str(len(frame_file)))
# embed()
# if c in [0,2]:
# cmap, _, y_axis = plt_modulation_overview(axs, c, cell_type_here,
# cv_name, frame_file, max_val, score,
# species)
# axs.set_ylabel(score)
# embed()#frame_file[(frame_file.cv_base < 0.65) & (frame_file.response_modulation > 200)].response_modulation
# axs.set_xlabel(cv_name)
# axs.get_shared_x_axes().join(*[axs, axd])
# elif species == ' Apteronotus albifrons':
# plt_albi(ax[4, 1], cell_type_here, colors, max_val, species, x_axis, y_axis)
# ax[1,cv_n].set_xlim(0, max_val)
# set_same_ylim(np.concatenate(ax[1::, :]))
# set_same_ylim(np.concatenate(ax[1::, :]),ylim_type ='xlim')
# set_same_ylim(ax[0, :], ylim_type='xlim')
# set_ylim_same()
# ax[1, 1].get_shared_y_axes().join(*ax[1, 1::])
# counter += 1
# embed()
############################################
# printe um welchen Zeitraum es sich handelt
frame_file = setting_overview_score(frame_load_sp, cell_type_here='', f_exclude=False, snippet=None, min_amp='min',

4
susceptibility1.tex.bak
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@ -449,7 +449,7 @@ Theoretical work on leaky integrate-and-fire and conductance-based models sugges
\begin{figure*}[t]
\includegraphics[width=\columnwidth]{nonlin_regime.pdf}
\caption{\label{fig:nonlin_regime} Nonlinear response of a model P-unit in response to increasing beat amplitudes in a three-fish or two-beat setting. The model used has the cell identifier 2013-01-08-aa (table~\ref{modelparams}). \figitem{A--D}. Top -- stimulus consisting of two beats. The frequency of the two present beats are 30\,Hz (\fone{}) and 130\,Hz (\ftwo{}). The \ftwo{} is equal to the baseline firing rate \fbase{}. The contrasts of the beats are equal in all examples and increase in the panels \panel{A--D}. Middle -- spike response of the model P-unit to the stimulus above. Bottom -- power spectrum of the firing rate of this P-unit. Nonlinear effects at \fsum{} (orange marker) and at \fdiff{} (red marker) increase for intermediate contrasts (\panel{B}), decrease for stronger contrasts (\panel{C}) and again increase for very strong contrasts (\panel{D}). \figitem{E} Amplitude the linear (\bone{} and \btwo{}) and nonlinear (\bdiff{} and \bsum{}) responses of the model P-units plotted for increasing beat contrasts (contrasts equal for both beats). }
\caption{\label{fig:nonlin_regime} Nonlinear response of a model P-unit in response to increasing beat amplitudes in a three-fish or two-beat setting. The model used has the cell identifier 2013-01-08-aa (table~\ref{modelparams}). \figitem{A--D}. Top -- stimulus consisting of two beats. The beat frequencies are 30\,Hz (\bone{}) and 130\,Hz (\btwo{}). \btwo{} is equal to the baseline firing rate \fbase{}. The beat contrasts are equal in the respective example, and increase from \panel{A} to \panel{D}. Middle -- spike response of the model P-unit to the stimulus above. Bottom -- power spectrum of the firing rate of this P-unit. Nonlinear effects at \bsum{} (orange marker) and at \bdiff{} (red marker) increase for intermediate contrasts (\panel{B}), decrease for stronger contrasts (\panel{C}) and again increase for very strong contrasts (\panel{D}). \figitem{E} Amplitude of the linear (\bone{} and \btwo{}) and nonlinear (\bdiff{} and \bsum{}) responses of the model P-units plotted for increasing beat contrasts (contrasts equal for both beats). }
\end{figure*}
Without any external stimulation, a P-unit fires action potentials at a spontaneous baseline rate \fbase{} to the fish's own EOD of frequency \feod{}. Accordingly, a peak at \fbase{} is present in the power spectrum of this baseline activity (\subfigrefb{fig:motivation}{A}). Superposition of the receiver's EOD with an EOD of another fish with frequency $f_1$ results in a beat, a periodic amplitude modulation of the receiver's EOD. The frequency of the beat is given by the difference frequency $\Delta f_1 = f_1 - \feod$ between the two fish. P-units encode this beat in their firing rate \citep{Bastian1981a, Barayeu2023} and consequently, a peak at this beat frequency appears the the power spectrum of the response (\subfigrefb{fig:motivation}{B}). A second peak at the first harmonic indicates a nonlinear response that here is easily identified by the clipping of the P-unit's firing rate at zero. Pairing the fish with another fish with a higher beat frequency $\Delta f_2 = f_2 - \feod$ results in a weaker response with a single peak in the response power spectrum (\subfigrefb{fig:motivation}{C}). Note that $\Delta f_2$ has been chosen to match the P-unit's baseline firing rate.
@ -513,7 +513,7 @@ We estimated the second-order susceptibility of P-unit responses using RAM stimu
\begin{figure*}[t]
\includegraphics[width=\columnwidth]{model_full.pdf}
\caption{\label{fig:model_full} Using second-order susceptibility to predict responses to sine-wave stimuli. \figitem[]{A} Absolute value of the second-order susceptibility, \Eqnref{eq:susceptibility}, for both positive and negative frequencies. \susceptf{} was estimated from $N=10^6$ trials of model simulations in the noise-split condition (cell 2013-01-08-aa, see table~\ref{modelparams} for model parameters). White lines indicate zero frequencies. Nonlinear responses at \fsum{} are quantified in the upper right and lower left quadrants. Nonlinear responses at \fdiff{} are quantified in the upper left and lower right quadrants. The baseline firing rate of this cell was at $\fbase=120$\,Hz. The position of the orange/red letters corresponds to the beat frequencies used for the stimulation with pure sine waves in the subsequent panels and indicates the sum/difference of those beat frequencies. \figitem[]{B} Absolute value of the first-order susceptibility. \figitem{C--F} Black line -- power spectral density of model simulations in response to stimulation with two pure sine waves, \fone{} and \ftwo, in addition to the receiving fish's own EOD (three fish scenario). The contrast of beat beats is 0.0065. Colored circles highlight the height of selected peaks in the power spectrum. Black circles highlight the peak height that can be predicted from \panel{A, B}. Grey line -- power spectral density of model in the baseline condition. \figitem{B} The sum of the two beat frequencies match \fbase{}. \figitem{C} The difference of \fone{} and \ftwo{} match \fbase{}. \figitem{D} Only the first beat frequency matches \fbase{}. \figitem{C} None of the two beat frequencies matches \fbase{}.}
\caption{\label{fig:model_full} Using second-order susceptibility to predict responses to sine-wave stimuli. \figitem[]{A} Absolute value of the second-order susceptibility, \Eqnref{eq:susceptibility}, for both positive and negative frequencies. \susceptf{} was estimated from $N=10^6$ trials of model simulations in the noise-split condition (cell 2013-01-08-aa, see table~\ref{modelparams} for model parameters). White lines indicate zero frequencies. Nonlinear responses at \fsum{} are quantified in the upper right and lower left quadrants. Nonlinear responses at \fdiff{} are quantified in the upper left and lower right quadrants. The baseline firing rate of this cell was at $\fbase=120$\,Hz. The position of the orange/red letters corresponds to the beat frequencies used for the stimulation with pure sine waves in the subsequent panels and indicates the sum/difference of those beat frequencies. \figitem{B--E} Black line -- power spectral density of model simulations in response to stimulation with two pure sine waves, \fone{} and \ftwo, in addition to the receiving fish's own EOD (three-fish scenario). The contrast of beat beats is 0.02. Colored circles highlight the height of selected peaks in the power spectrum. Grey line -- power spectral density of model in the baseline condition. \figitem{B} The sum of the two beat frequencies match \fbase{}. \figitem{C} The difference of \fone{} and \ftwo{} match \fbase{}. \figitem{D} Only the first beat frequency matches \fbase{}. \figitem{C} None of the two beat frequencies matches \fbase{}.}
\end{figure*}
However, the second-order susceptibility \Eqnref{eq:susceptibility} is a spectral measure that is based on Fourier transforms and thus is also defined for negative stimulus frequencies. The full \susceptf{} matrix is symmetric with respect to the origin. In the upper-right and lower-left quadrants of \susceptf{}, stimulus-evoked responses at \fsum{} are shown, whereas in the lower-right and upper-left quadrants nonlinear responses at the difference \fdiff{} are shown (\figref{fig:model_full}). The vertical and horizontal lines at \foneb{} and \ftwob{} are very pronounced in the upper-right quadrant of \subfigrefb{fig:model_full}{A} for nonlinear responses at \fsum{} and extend into the upper-left quadrant (representing \fdiff) where they fade out towards more negative $f_1$ frequencies. The peak in the response power-spectrum at \fdiff{} evoked by pure sine-wave stimulation (\subfigrefb{fig:motivation}{D}) is predicted by the horizontal line in the upper-left quadrant (\subfigrefb{fig:model_full}{A}, \citep{Schlungbaum2023}).

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