nonlinearbaseline2025/rebuttal2.tex

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\begin{document}

\issue{\large Reviewer \#1}

\issue{The manuscript "Spike generation in electroreceptor afferents
  introduces additional spectral response components by weakly
  nonlinear interactions" submitted to eNeuro represents a noteworthy
  advancement in the field, as it elucidates that, under an often
  naturally occurring scenario the non linear responses of the pair
  electroreceptor-primary afferent ensemble may intervene in signal
  encoding. The manuscript shows that during the reception of signals
  originating distantly from multiple individual conspecifics,
  electroreceptor primary afferents may exhibit nonlinear responses
  allowing the fish to guess the presence of more than one
  individual. This is articulated with clarity through a
  straightforward leaky-integrate-and-fire model of electroreceptor
  responsiveness. The illustrations are both lucid and enhance the
  comprehension of the results section. The discussion is
  sound. However, the intrinsic value of the manuscript would likely
  be obscure without a more "biologist-friendly" approach. I would
  like to offer several suggestions that may serve to either enhance
  the manuscript or inspire future research endeavors.}

\response{}

\issue{First, I should point out that beyond the presence of a
  threshold-induced nonlinearity, the complex structure of the
  axon-like dendritic innervation receptor cell terminals within the
  electroreceptor organ. This analogical nonlinear response may have
  its origin in the branched anatomy of the dendrite-axon terminals,
  easily verifiable by anatomical studies, and the presence, hardly
  demonstrable but plausible, of ion channel diversity; see, for
  example, Trigo, F. F. (2019) Antidromic analog signaling. Frontiers
  in Cellular Neuroscience, 13, 354. for a discussion of the general
  case and the study by Troy Smith, Unguez and Weber (2006, Fig. 3) in
  which receptor cells of tuberous electroreceptor organs and their
  afferents from Apteronotus leptorhinchus were labeled to varying
  degrees by six anti-Kv1 antibodies. Kv1.1 and Kv1.4 immunoreactivity
  was intense in the afferent axons of electroreceptor organs. It is
  noteworthy that Kv1 are low-threshold channels and, in some cases,
  exhibit a prolonged refractory period (Nogueira and Caputi,
  2013). These sources of nonlinearity could be mentioned to
  strengthen the links between well-written theoretical analysis and
  the practical field of experimental physiology.}

\response{READ PAPERS AND CITE THEM}

\issue{Second, and along the same lines, the discussion could be
  improved by mentioning the effects and significance of these
  nonlinearities when the recipient fish makes changes in its EOD
  frequency in at least two cases: a) sustained changes, as in
  interference avoidance responses, and b) transient changes, as in
  chirps.}

\response{THINK ABOUT IT AND ADD TO DISCUSSION}

\issue{Finally, the precise description of the methods could be
  expanded for reaching a broader biology audience; in particular, the
  purpose of some procedures should be explained in some way. While
  the meaning seems clear as the reader scrolls through the results, a
  first reading of the methods, although accurate, does not offer the
  biology reader a quick and intuitive approach to the study.}

\response{IMPROVE METHOD DESCRIPTION AS DESCRIBED BELOW}

\issue{Next, I list some minor more detailed comments that may clarify
  the design and methods and facilitate their understanding by a
  broader audience.}

\issue{In general, you referenced P receptors and ampullary
  structures; however, what about T receptors? How can one distinguish
  between T and P in the recordings? Might it be possible that the
  negative results observed in certain receptors are attributable to
  the type of receptor (P or T)? Did you postulate, as suggested by
  Viancour (1979), that there exists a continuum of responsiveness
  between the extreme profiles of P (signal amplitude) and T (signal
  slope)?}

\response{SAY SOMETHING ABOUT T-UNITS AND THAT WE DEFINITELY EXCLUDED THEM}

\issue{In line 147, rather than using the term
  "laterally," I believe it would enhance clarity to state "parallel
  to each side of the fish," as the orientation of the electrodes may
  otherwise remain ambiguous.}

\response{Done.}

\issue{Furthermore, no commentary or discussion is provided regarding
  the fact that the stimulation procedure, which is transverse to the
  main axis of the body, neglects to account for the effects on the
  field foveal perioral region where the majority of receptors are
  located.}

\response{ADD SOMETHING TO STIMULATION SECTION}

\issue{Line 148, the phrase "band limited white noise" lacks
  clarity. Upon my initial reading, I assumed that the cutoff limit
  you referenced pertained to a low pass filter applicable to both
  ampullary and P-type tuberous receptors; however, it could indeed be
  interpreted as the opposite. In a strict sense, all "white noise
  stimuli" are band-passed. The duration of the stimulus establishes a
  lower cutoff for the band pass in one instance, while the
  responsiveness of the stimulation apparatus delineates the upper
  cutoff limits in another. Nevertheless, once one comprehends the
  objective of the experiment, the implicit significance of the white
  noise filtering becomes exceedingly apparent. Thus, this description
  could benefit from greater clarity to avoid the need to explore the
  results first in order to understand well.}

\response{STATE TYPE OF FILTERING IN STIMULATION SECTION, CITE ALES SKORJANC}

\issue{Line 154. This procedure elicits a modulation of the envelope
  of the reafferent signal. To achieve this, you adopted distinct
  approaches for the ampullary and P receptors: a) in the case of
  ampullary receptors, you presented white noise and incrementally
  elevated its amplitude (variance) until the mean amplitude of the
  averaged sine wave recorded via local electrodes adjacent to the
  gills exhibited an increase of 1 to 5\%, is this correct?}

\response{NO! EXPLAIN AND ENHANCE STIMULATION SECTION}

\issue{b) with regard to P receptors, you multiplied the head-to-tail
  ongoing signal by a white noise signal and played the resultant
  output, adjusting the amplitude until the local signal experienced
  an enhancement of 1 to 5\% in average, is this interpretation
  accurate?  Since the head to tail EOD and the local signals over the
  body are out of phase this process induces both amplitude and phase
  modulation of the stimulus signal, which will be contingent upon the
  phase lag of the local EOD at the receptor site in relation to the
  head-to-tail EOD. This phase lag, as reported in the literature,
  exhibits a shift ranging from pi to 2pi between a receptor situated
  at the head and another at the tail. (I posit that this may not
  significantly impact individual receptors response; however, how
  does this influence the relative timing among distinct receptors,
  and what is its correlation with jamming avoidance mechanisms?)
  Furthermore, does this form of noise modulation exert a comparable
  effect on the flanks (i.e., the apex of the derivative) as it does
  on the peaks of the signal themselves? How does this affect the
  recruitment of P and T receptors?}

\response{ALL THESE DETAILS DO NOT MATTER AT THE LEVL OF INDIVIDUAL P-UNITS. SEE HLADNIK.}

\issue{Line 238. Are you referring to the terminal non-myelinated
  branches that connect receptor cells to the initial Ranvier node?
  The peripheral afferent constitutes a myelinated and active dendrite
  whose distal branches receive synapses from receptor
  cells. Consequently, there exists a summation occurring at some
  juncture, likely at the first node, that facilitates the generation
  of an action potential. Otherwise, the signal would not be
  effectively propagated from the receptors to the ganglia where the
  somata reside. Receptors across various species exhibit notable
  differences; some are myelinated within the electroreceptor organ,
  while others display the first node external to the electroreceptor
  organ. Could you discuss this aspect, considering the anatomical
  structure of the receptor in your species?}

\response{READ LITERATURE AND SAY A FEW WORDS}


\issue{\large Reviewer \#2}

\issue{This work is a nice contribution to our general understanding
  of nonlinearities in sensory coding, and to our detailed
  understanding of behaviorally relevant information processing in the
  electrosensory systems of weakly electric fish. I have several
  suggestions for the authors.}

\response{}

\issue{(1) Abstract, line 29. "...if these frequencies or their sum
  match the neuron's baseline firing rate" is not quite accurate
  because "these frequencies" implies BOTH input frequencies must
  match the baseline firing rate. I think you mean to state, "...if
  one of these frequencies or their sum match the neuron's baseline
  firing rate."}

\response{Your are right! We changed the sentence as suggested.}

\issue{(2) Abstract, line 33. The wording here is unclear,
  specifically what you mean by "much stronger." Much stronger what
  exactly? I think you mean to refer to the fact that these nonlinear
  responses were more common and stronger in ampullary units than
  P-units, but "much stronger" does not clearly convey this,
  especially in the abstract.}

\response{We changed the sentence to ``...  we identify these predicted nonlinear responses primarily in low-noise P-units and in more than every second ampullary cell.''}

\issue{(3) Figure 1A. "r" needs to be clearly defined here. Based on
  the text, it seems to be the baseline firing rate of the neuron, but
  this needs to be made clear in the figure legend.}

\response{We added a brief sentence to the caption.}

\issue{(4) Figure 1B. "Because frequencies can also be negative..."
  This is unclear and needs more explanation, especially because there
  are no negative frequencies in your actual data. How can frequencies
  be negative?}

\response{UH... LETS WRITE SOMETHING}

\issue{(5) Figure 3 and 4. Why are the power spectra clipped at such
  low frequencies? This makes it impossible to see peaks due to
  potential df2 harmonics and fEOD. Figure 5 extends to higher
  frequencies to illustrate these and it is not clear why these are
  clipped in these two figures.}

\response{HM. LETS CHECK HOW IT LOOKS LIKE. BUT THIS LOW FREQUENCY RANGE IS THE RELEVANT ONE FOR CODING.}

\issue{(6) Figure 3. Why are these example firing rates based on
  convolution with a 1 ms Gaussian kernel if the analyses were based
  on convolution with a 2 ms Gaussian kernel (line 169)? It seems that
  example data should effectively illustrate how the data were
  actually analyzed. More fundamentally, why would a 2-fold difference
  in kernel width be appropriate for presentation vs. analysis?}

\response{DAMN. LETS REDO THE FIGURE.}

\issue{(7) Figure 3D legend. The relationship between 2nd order AM
  (envelope) and the two nonlinear peaks should be made clear. I
  believe the envelope is represented by both peaks, correct?}

\response{ADD SENTENCE.}

\issue{(8) Line 302. "not-small amplitude" is arbitrary and
  vague. Please be clearer and more precise.}

\response{}

\issue{(9) Figures 5C and 6C. For the stimuli with the red RAM
  waveforms, please make it clear which contrast is being represented
  by these traces, as responses to two different contrasts are shown.}

\response{We added the shown stimulus contrasts to both figures.}

\issue{(10) Figure 5E, F. The legend states that second-order
  susceptibility for both the low and high stimulus contrasts are
  shown in E, but E shows the low contrast and F shows the high
  contrast.}

\response{Good catch! Fixed.}

\issue{(11) Lines 453-465, Figure 8. This section was confusing to
  me. Why does second-order susceptibility decrease as stimulus
  contrast increases, when theory predicts that higher signal-to-noise
  ratios should result in larger nonlinearities?}

\response{NOT WEAK ANY MORE. DEVIATION FROM SQUARE DEPENDENCE. BENJI!}

\issue{(12) Lines 655-675. This was a very nice end to the discussion,
  but I would like to see more. I would like the broader significance
  of this study to be expanded upon with respect to (1) behavioral
  relevance for signal detection in weakly electric fish, and (2)
  comparative relevance for other modalities and species. Speculation
  is fine so long as it is clearly indicated as such. It might work
  best to expand upon and distribute the information in lines 655-666
  throughout the discussion at relevant points, rather than as an
  afterthought. The conclusion section in lines 667-675 could then
  reiterate these points briefly and delve into more detail on
  comparative considerations.}

\response{UH. LETS THINK ABOUT IT.}

\end{document}