started rebuttal
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rebuttal2.tex
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rebuttal2.tex
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\begin{document}
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\issue{\large Reviewer \#1}
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\issue{The manuscript "Spike generation in electroreceptor afferents
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introduces additional spectral response components by weakly
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nonlinear interactions" submitted to eNeuro represents a noteworthy
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advancement in the field, as it elucidates that, under an often
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naturally occurring scenario the non linear responses of the pair
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electroreceptor-primary afferent ensemble may intervene in signal
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encoding. The manuscript shows that during the reception of signals
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originating distantly from multiple individual conspecifics,
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electroreceptor primary afferents may exhibit nonlinear responses
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allowing the fish to guess the presence of more than one
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individual. This is articulated with clarity through a
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straightforward leaky-integrate-and-fire model of electroreceptor
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responsiveness. The illustrations are both lucid and enhance the
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comprehension of the results section. The discussion is
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sound. However, the intrinsic value of the manuscript would likely
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be obscure without a more "biologist-friendly" approach. I would
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like to offer several suggestions that may serve to either enhance
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the manuscript or inspire future research endeavors.}
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\response{}
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\issue{First, I should point out that beyond the presence of a
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threshold-induced nonlinearity, the complex structure of the
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axon-like dendritic innervation receptor cell terminals within the
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electroreceptor organ. This analogical nonlinear response may have
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its origin in the branched anatomy of the dendrite-axon terminals,
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easily verifiable by anatomical studies, and the presence, hardly
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demonstrable but plausible, of ion channel diversity; see, for
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example, Trigo, F. F. (2019) Antidromic analog signaling. Frontiers
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in Cellular Neuroscience, 13, 354. for a discussion of the general
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case and the study by Troy Smith, Unguez and Weber (2006, Fig. 3) in
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which receptor cells of tuberous electroreceptor organs and their
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afferents from Apteronotus leptorhinchus were labeled to varying
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degrees by six anti-Kv1 antibodies. Kv1.1 and Kv1.4 immunoreactivity
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was intense in the afferent axons of electroreceptor organs. It is
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noteworthy that Kv1 are low-threshold channels and, in some cases,
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exhibit a prolonged refractory period (Nogueira and Caputi,
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2013). These sources of nonlinearity could be mentioned to
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strengthen the links between well-written theoretical analysis and
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the practical field of experimental physiology.}
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\response{READ PAPERS AND CITE THEM}
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\issue{Second, and along the same lines, the discussion could be
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improved by mentioning the effects and significance of these
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nonlinearities when the recipient fish makes changes in its EOD
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frequency in at least two cases: a) sustained changes, as in
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interference avoidance responses, and b) transient changes, as in
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chirps.}
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\response{THINK ABOUT IT AND ADD TO DISCUSSION}
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\issue{Finally, the precise description of the methods could be
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expanded for reaching a broader biology audience; in particular, the
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purpose of some procedures should be explained in some way. While
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the meaning seems clear as the reader scrolls through the results, a
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first reading of the methods, although accurate, does not offer the
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biology reader a quick and intuitive approach to the study.}
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\response{IMPROVE METHOD DESCRIPTION AS DESCRIBED BELOW}
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\issue{Next, I list some minor more detailed comments that may clarify
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the design and methods and facilitate their understanding by a
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broader audience.}
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\issue{In general, you referenced P receptors and ampullary
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structures; however, what about T receptors? How can one distinguish
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between T and P in the recordings? Might it be possible that the
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negative results observed in certain receptors are attributable to
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the type of receptor (P or T)? Did you postulate, as suggested by
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Viancour (1979), that there exists a continuum of responsiveness
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between the extreme profiles of P (signal amplitude) and T (signal
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slope)?}
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\response{SAY SOMETHING ABOUT T-UNITS AND THAT WE DEFINITELY EXCLUDED THEM}
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\issue{In line 147, rather than using the term
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"laterally," I believe it would enhance clarity to state "parallel
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to each side of the fish," as the orientation of the electrodes may
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otherwise remain ambiguous.}
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\response{Done.}
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\issue{Furthermore, no commentary or discussion is provided regarding
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the fact that the stimulation procedure, which is transverse to the
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main axis of the body, neglects to account for the effects on the
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field foveal perioral region where the majority of receptors are
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located.}
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\response{ADD SOMETHING TO STIMULATION SECTION}
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\issue{Line 148, the phrase "band limited white noise" lacks
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clarity. Upon my initial reading, I assumed that the cutoff limit
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you referenced pertained to a low pass filter applicable to both
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ampullary and P-type tuberous receptors; however, it could indeed be
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interpreted as the opposite. In a strict sense, all "white noise
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stimuli" are band-passed. The duration of the stimulus establishes a
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lower cutoff for the band pass in one instance, while the
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responsiveness of the stimulation apparatus delineates the upper
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cutoff limits in another. Nevertheless, once one comprehends the
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objective of the experiment, the implicit significance of the white
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noise filtering becomes exceedingly apparent. Thus, this description
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could benefit from greater clarity to avoid the need to explore the
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results first in order to understand well.}
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\response{STATE TYPE OF FILTERING IN STIMULATION SECTION, CITE ALES SKORJANC}
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\issue{Line 154. This procedure elicits a modulation of the envelope
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of the reafferent signal. To achieve this, you adopted distinct
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approaches for the ampullary and P receptors: a) in the case of
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ampullary receptors, you presented white noise and incrementally
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elevated its amplitude (variance) until the mean amplitude of the
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averaged sine wave recorded via local electrodes adjacent to the
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gills exhibited an increase of 1 to 5\%, is this correct?}
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\response{NO! EXPLAIN AND ENHANCE STIMULATION SECTION}
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\issue{b) with regard to P receptors, you multiplied the head-to-tail
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ongoing signal by a white noise signal and played the resultant
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output, adjusting the amplitude until the local signal experienced
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an enhancement of 1 to 5\% in average, is this interpretation
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accurate? Since the head to tail EOD and the local signals over the
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body are out of phase this process induces both amplitude and phase
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modulation of the stimulus signal, which will be contingent upon the
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phase lag of the local EOD at the receptor site in relation to the
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head-to-tail EOD. This phase lag, as reported in the literature,
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exhibits a shift ranging from pi to 2pi between a receptor situated
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at the head and another at the tail. (I posit that this may not
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significantly impact individual receptors response; however, how
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does this influence the relative timing among distinct receptors,
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and what is its correlation with jamming avoidance mechanisms?)
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Furthermore, does this form of noise modulation exert a comparable
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effect on the flanks (i.e., the apex of the derivative) as it does
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on the peaks of the signal themselves? How does this affect the
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recruitment of P and T receptors?}
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\response{ALL THESE DETAILS DO NOT MATTER AT THE LEVL OF INDIVIDUAL P-UNITS. SEE HLADNIK.}
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\issue{Line 238. Are you referring to the terminal non-myelinated
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branches that connect receptor cells to the initial Ranvier node?
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The peripheral afferent constitutes a myelinated and active dendrite
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whose distal branches receive synapses from receptor
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cells. Consequently, there exists a summation occurring at some
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juncture, likely at the first node, that facilitates the generation
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of an action potential. Otherwise, the signal would not be
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effectively propagated from the receptors to the ganglia where the
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somata reside. Receptors across various species exhibit notable
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differences; some are myelinated within the electroreceptor organ,
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while others display the first node external to the electroreceptor
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organ. Could you discuss this aspect, considering the anatomical
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structure of the receptor in your species?}
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\response{READ LITERATURE AND SAY A FEW WORDS}
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\issue{\large Reviewer \#2}
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\issue{This work is a nice contribution to our general understanding
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of nonlinearities in sensory coding, and to our detailed
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understanding of behaviorally relevant information processing in the
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electrosensory systems of weakly electric fish. I have several
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suggestions for the authors.}
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\response{}
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\issue{(1) Abstract, line 29. "...if these frequencies or their sum
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match the neuron's baseline firing rate" is not quite accurate
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because "these frequencies" implies BOTH input frequencies must
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match the baseline firing rate. I think you mean to state, "...if
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one of these frequencies or their sum match the neuron's baseline
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firing rate."}
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\response{Your are right! We changed the sentence as suggested.}
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\issue{(2) Abstract, line 33. The wording here is unclear,
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specifically what you mean by "much stronger." Much stronger what
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exactly? I think you mean to refer to the fact that these nonlinear
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responses were more common and stronger in ampullary units than
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P-units, but "much stronger" does not clearly convey this,
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especially in the abstract.}
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\response{We changed the sentence to ``... we identify these predicted nonlinear responses primarily in low-noise P-units and in more than every second ampullary cell.''}
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\issue{(3) Figure 1A. "r" needs to be clearly defined here. Based on
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the text, it seems to be the baseline firing rate of the neuron, but
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this needs to be made clear in the figure legend.}
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\response{We added a brief sentence to the caption.}
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\issue{(4) Figure 1B. "Because frequencies can also be negative..."
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This is unclear and needs more explanation, especially because there
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are no negative frequencies in your actual data. How can frequencies
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be negative?}
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\response{UH... LETS WRITE SOMETHING}
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\issue{(5) Figure 3 and 4. Why are the power spectra clipped at such
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low frequencies? This makes it impossible to see peaks due to
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potential df2 harmonics and fEOD. Figure 5 extends to higher
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frequencies to illustrate these and it is not clear why these are
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clipped in these two figures.}
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\response{HM. LETS CHECK HOW IT LOOKS LIKE. BUT THIS LOW FREQUENCY RANGE IS THE RELEVANT ONE FOR CODING.}
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\issue{(6) Figure 3. Why are these example firing rates based on
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convolution with a 1 ms Gaussian kernel if the analyses were based
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on convolution with a 2 ms Gaussian kernel (line 169)? It seems that
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example data should effectively illustrate how the data were
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actually analyzed. More fundamentally, why would a 2-fold difference
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in kernel width be appropriate for presentation vs. analysis?}
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\response{DAMN. LETS REDO THE FIGURE.}
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\issue{(7) Figure 3D legend. The relationship between 2nd order AM
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(envelope) and the two nonlinear peaks should be made clear. I
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believe the envelope is represented by both peaks, correct?}
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\response{ADD SENTENCE.}
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\issue{(8) Line 302. "not-small amplitude" is arbitrary and
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vague. Please be clearer and more precise.}
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\response{}
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\issue{(9) Figures 5C and 6C. For the stimuli with the red RAM
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waveforms, please make it clear which contrast is being represented
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by these traces, as responses to two different contrasts are shown.}
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\response{We added the shown stimulus contrast to the figure.}
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\issue{(10) Figure 5E, F. The legend states that second-order
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susceptibility for both the low and high stimulus contrasts are
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shown in E, but E shows the low contrast and F shows the high
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contrast.}
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\response{Good catch! Fixed.}
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\issue{(11) Lines 453-465, Figure 8. This section was confusing to
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me. Why does second-order susceptibility decrease as stimulus
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contrast increases, when theory predicts that higher signal-to-noise
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ratios should result in larger nonlinearities?}
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\response{NOT WEAK ANY MORE. DEVIATION FROM SQUARE DEPENDENCE. BENJI!}
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\issue{(12) Lines 655-675. This was a very nice end to the discussion,
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but I would like to see more. I would like the broader significance
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of this study to be expanded upon with respect to (1) behavioral
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relevance for signal detection in weakly electric fish, and (2)
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comparative relevance for other modalities and species. Speculation
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is fine so long as it is clearly indicated as such. It might work
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best to expand upon and distribute the information in lines 655-666
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throughout the discussion at relevant points, rather than as an
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afterthought. The conclusion section in lines 667-675 could then
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reiterate these points briefly and delve into more detail on
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comparative considerations.}
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\response{UH. LETS THINK ABOUT IT.}
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\end{document}
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