diff --git a/pyrelacs/repros/calibration.py b/pyrelacs/repros/calibration.py
deleted file mode 100644
index 2de6288..0000000
--- a/pyrelacs/repros/calibration.py
+++ /dev/null
@@ -1,199 +0,0 @@
-import faulthandler
-import time
-
-import nixio as nix
-import uldaq
-from IPython import embed
-import numpy as np
-import matplotlib.pyplot as plt
-
-from pyrelacs.devices.mccdaq import MccDaq
-from pyrelacs.util.logging import config_logging
-
-log = config_logging()
-# for more information on seg faults
-faulthandler.enable()
-
-
-class Calibration(MccDaq):
- def __init__(self) -> None:
- super().__init__()
- self.SAMPLERATE = 40_000.0
- self.DURATION = 5
- self.AMPLITUDE = 1
- self.SINFREQ = 750
-
- @staticmethod
- def run(nix_file: nix.File):
- calb = Calibration()
- calb.check_beat(nix_file)
-
- def check_amplitude(self):
- db_values = [0.0, -5.0, -10.0, -20.0, -50.0]
- colors = ["red", "green", "blue", "black", "yellow"]
- self.set_attenuation_level(db_channel1=0.0, db_channel2=0.0)
- # write to ananlog 1
- t = np.arange(0, self.DURATION, 1 / self.SAMPLERATE)
- data = self.AMPLITUDE * np.sin(2 * np.pi * self.SINFREQ * t)
- fig, ax = plt.subplots()
-
- for i, db_value in enumerate(db_values):
- self.set_attenuation_level(db_channel1=db_value, db_channel2=db_value)
- log.debug(f"{db_value}")
-
- stim = self.write_analog(
- data,
- [0, 0],
- self.SAMPLERATE,
- ScanOption=uldaq.ScanOption.EXTTRIGGER,
- )
-
- data_channel_one = self.read_analog(
- [0, 0],
- self.DURATION,
- self.SAMPLERATE,
- ScanOption=uldaq.ScanOption.EXTTRIGGER,
- )
- time.sleep(1)
-
- log.debug("Starting the Scan")
- self.digital_trigger()
-
- try:
- self.ao_device.scan_wait(uldaq.WaitType.WAIT_UNTIL_DONE, 15)
- log.debug("Scan finished")
- self.write_bit(channel=0, bit=0)
- time.sleep(1)
- self.set_analog_to_zero()
- except uldaq.ul_exception.ULException:
- log.debug("Operation timed out")
- # reset the diggital trigger
- self.write_bit(channel=0, bit=0)
- time.sleep(1)
- self.set_analog_to_zero()
- self.disconnect_daq()
-
- if i == 0:
- ax.plot(t, stim, label=f"Input_{db_value}", color=colors[i])
- ax.plot(t, data_channel_one, label=f"Reaout {db_value}", color=colors[i])
-
- ax.legend()
- plt.show()
-
- self.disconnect_daq()
-
- def check_beat(self, nix_file: nix.File):
- self.set_attenuation_level(db_channel1=-10.0, db_channel2=0.0)
- t = np.arange(0, self.DURATION, 1 / self.SAMPLERATE)
- data = self.AMPLITUDE * np.sin(2 * np.pi * self.SINFREQ * t)
- # data = np.concatenate((data, data))
- db_values = [0.0, -5.0, -8.5, -10.0]
- colors = ["red", "blue", "black", "green"]
- colors_in = ["lightcoral", "lightblue", "grey", "lightgreen"]
- block = nix_file.create_block("Calibration", "data")
- # fig, axes = plt.subplots(2, 2, sharex="col")
- for i, db_value in enumerate(db_values):
- self.set_attenuation_level(db_channel1=db_value)
- stim = self.write_analog(
- data,
- [0, 0],
- self.SAMPLERATE,
- ScanOption=uldaq.ScanOption.EXTTRIGGER,
- )
- readout = self.read_analog(
- [0, 1],
- self.DURATION,
- self.SAMPLERATE,
- ScanOption=uldaq.ScanOption.EXTTRIGGER,
- )
- self.digital_trigger()
- log.info(self.ao_device)
- ai_status = uldaq.ScanStatus.RUNNING
- ao_status = uldaq.ScanStatus.RUNNING
-
- log.debug(
- f"Status Analog_output {ao_status}\n, Status Analog_input {ai_status}"
- )
- while (ai_status != uldaq.ScanStatus.IDLE) and (
- ao_status != uldaq.ScanStatus.IDLE
- ):
- # log.debug("Scanning")
- time.time_ns()
- ai_status = self.ai_device.get_scan_status()[0]
- ao_status = self.ao_device.get_scan_status()[0]
-
- self.write_bit(channel=0, bit=0)
- log.debug(
- f"Status Analog_output {ao_status}\n, Status Analog_input {ai_status}"
- )
-
- channel1 = np.array(readout[::2])
- channel2 = np.array(readout[1::2])
-
- stim_data = block.create_data_array(
- f"stimulus_{db_value}",
- "nix.regular_sampled",
- shape=data.shape,
- data=channel1,
- label="Voltage",
- unit="V",
- )
- stim_data.append_sampled_dimension(
- self.SAMPLERATE,
- label="time",
- unit="s",
- )
- fish_data = block.create_data_array(
- f"fish_{db_value}",
- "Array",
- shape=data.shape,
- data=channel2,
- label="Voltage",
- unit="V",
- )
- fish_data.append_sampled_dimension(
- self.SAMPLERATE,
- label="time",
- unit="s",
- )
-
- self.set_analog_to_zero()
-
-
-def decibel(power, ref_power=1.0, min_power=1e-20):
- """Transform power to decibel relative to ref_power.
-
- \\[ decibel = 10 \\cdot \\log_{10}(power/ref\\_power) \\]
- Power values smaller than `min_power` are set to `-np.inf`.
-
- Parameters
- ----------
- power: float or array
- Power values, for example from a power spectrum or spectrogram.
- ref_power: float or None or 'peak'
- Reference power for computing decibel.
- If set to `None` or 'peak', the maximum power is used.
- min_power: float
- Power values smaller than `min_power` are set to `-np.inf`.
-
- Returns
- -------
- decibel_psd: array
- Power values in decibel relative to `ref_power`.
- """
- if np.isscalar(power):
- tmp_power = np.array([power])
- decibel_psd = np.array([power])
- else:
- tmp_power = power
- decibel_psd = power.copy()
- if ref_power is None or ref_power == "peak":
- ref_power = np.max(decibel_psd)
- decibel_psd[tmp_power <= min_power] = float("-inf")
- decibel_psd[tmp_power > min_power] = 10.0 * np.log10(
- decibel_psd[tmp_power > min_power] / ref_power
- )
- if np.isscalar(power):
- return decibel_psd[0]
- else:
- return decibel_psd
diff --git a/pyrelacs/repros/sinus.py b/pyrelacs/repros/sinus.py
deleted file mode 100644
index 4a7134d..0000000
--- a/pyrelacs/repros/sinus.py
+++ /dev/null
@@ -1,3 +0,0 @@
-class Sinus:
- def __init__(self) -> None:
- pass