[project]
name = "oepyhs2nix"
version = "0.1.0"
description = "Converting ophen-ephys data to nix format"
readme = "README.md"
requires-python = ">=3.13"
dependencies = [
    "matplotlib>=3.10.6",
    "neo>=0.14.2",
    "nixio>=1.5.4",
    "rich>=14.1.0",
    "rlxnix",
    "scipy>=1.16.2",
    "typer>=0.19.2",
]
[project.scripts]
oephys2nix = "oephys2nix.main:app"

[project.optional-dependencies]
docs = [
    "jupyter>=1.1.1",
    "jupyterlab>=4.4.9",
    "plotly>=6.3.1",
    "quartodoc>=0.11.1",
]

[tool.ruff]
line-length = 100
indent-width = 4

[tool.ruff.lint]
select = [
    "W", # pycodestyle
    "E", # pycodestyle
    "F", # Pyflakes
    "UP", # pyupgrade
    "B", # flake8-bugbear
    "SIM", # flake8-simplify
    "ANN", # flake8-annotations
    "A", # flake8-builtins
    "COM", # flake8-commas
    "C4", # flake8-comprehensions
    "EM", # flake8-error-msg
    "EXE", # flake8-executable
    "ICN", # flake8-import-conventions
    "PT", # flake8-pytest-style
    "Q", # flake8-quotes
    "RET", # flake8-return
    "SIM", # flake8-simplify
    "ARG", # flake8-unused-arguments
    "PTH", # flake8-use-pathlib
    "PD", # pandas-vet
    "PL", # pylint
    "TRY", # tryceratops
    "NPY", # numpy-specific
    "I", # isort
    "C90", # complexity (McCabe)
    "N", # pep8-naming
    "D", # pydocstyle
]
ignore = [
    "COM812", # missing trailing comma
    "TD002", # missing todo author
    "TD003", # missing todo link
]

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
line-ending = "auto"

[tool.uv.sources]
rlxnix = { git = "https://github.com/wendtalexander/relacsed_nix.git", branch = "open-ephys" }