From a8778f359698009c3352ec401f6a102de29dcd12 Mon Sep 17 00:00:00 2001
From: wendtalexander <wendtalexander@protonmail.com>
Date: Tue, 21 Oct 2025 15:06:40 +0200
Subject: [PATCH] [doc] adding doc for different comands

---
 doc/usage.qmd | 30 +++++++++++++++++++++++++++++-
 1 file changed, 29 insertions(+), 1 deletion(-)

diff --git a/doc/usage.qmd b/doc/usage.qmd
index 60586e2..8a4e286 100644
--- a/doc/usage.qmd
+++ b/doc/usage.qmd
@@ -2,10 +2,38 @@
 title: How to use it
 ---
 
+### 1.Usage
 If you have a folder or multiple folders with each containing two recordings one from `relacs` and one from `open-ephys` you can simply run the CLI like this:
 
 ```{python}
 # leave out the ! at the beginning if you running this in your shell
-!oephys2nix ../oephys2nix/test/Test1/
+!oephys2nix convert ../oephys2nix/test/Test1/
 ```
 which provides you with information about the transition of the stimuli into the new file.
+
+### 1.2 Timeline plot
+```sh
+oephys2nix timeline ../oephys2nix/test/Test1/
+```
+```{python}
+# | echo: False
+from oephys2nix.main import timeline
+
+path = "../oephys2nix/test/Test1/"
+timeline(path)
+```
+
+### 1.3 plot
+```sh
+oephys2nix plot ../oephys2nix/test/Test1/
+```
+
+```{python}
+# | echo: False
+from oephys2nix.main import plot
+
+path = "../oephys2nix/test/Test1/"
+plot(path)
+```
+
+