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[main] adding timeline command

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This commit is contained in:
wendtalexander 2025-10-20 10:19:46 +02:00
parent f3f5f916fb
commit 5bc7b31b28
1 changed files with 24 additions and 1 deletions
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25
oephys2nix/main.py
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@ -3,6 +3,7 @@ from pathlib import Path
from typing import Annotated from typing import Annotated
import nixio import nixio
import rlxnix as rlx
import typer import typer
from IPython import embed from IPython import embed
from rich.console import Console from rich.console import Console
@ -37,11 +38,11 @@ def main(
setup_logging(logging.getLogger("oephys2nix"), verbosity=verbose) setup_logging(logging.getLogger("oephys2nix"), verbosity=verbose)
log.info(f"Selected data_path is {data_path}") log.info(f"Selected data_path is {data_path}")
open_ephys_data_paths = list(Path(data_path).rglob("*open-ephys")) open_ephys_data_paths = list(Path(data_path).rglob("*open-ephys"))
relacs_data_paths = list(Path(data_path).rglob("*relacs/*.nix"))
if not open_ephys_data_paths: if not open_ephys_data_paths:
log.error("Did not find any open-ephys data") log.error("Did not find any open-ephys data")
raise typer.Exit() raise typer.Exit()
relacs_data_paths = list(Path(data_path).rglob("*relacs/*.nix"))
if not relacs_data_paths: if not relacs_data_paths:
log.error("Did not find any relacs data") log.error("Did not find any relacs data")
raise typer.Exit() raise typer.Exit()
@ -97,5 +98,27 @@ def main(
# stim.plot_stimulus() # stim.plot_stimulus()
@app.command()
def timeline(
data_path: Path = typer.Argument(
...,
help="The source directory containing the Open Ephys data.",
exists=True,
file_okay=False,
dir_okay=True,
readable=True,
resolve_path=True,
),
):
relacs_data_paths = list(Path(data_path).rglob("*relacs/*.nix"))
if not relacs_data_paths:
log.error("Did not find any relacs data")
raise typer.Exit()
dataset = rlx.Dataset(str(relacs_data_paths[0]))
dataset.plot_timeline()
dataset.close()
if __name__ == "__main__": if __name__ == "__main__":
app() app()