From f7f0b1082830943bd01d46b98d149d794d0139c0 Mon Sep 17 00:00:00 2001
From: Lisa <lisa-ruth.vial@student.uni-tuebingen.de>
Date: Thu, 31 Oct 2019 15:22:12 +0100
Subject: [PATCH] figure out graphs
---
ephys_analysis.py | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/ephys_analysis.py b/ephys_analysis.py
index 1af0b94..6c0dc8e 100644
--- a/ephys_analysis.py
+++ b/ephys_analysis.py
@@ -20,8 +20,9 @@ def analyze_sams(filename):
f = nix.File.open(filename, nix.FileMode.ReadOnly)
b = f.blocks[0]
b.metadata.pprint(max_depth=-1) # max_depth=-1: alles rausschreiben
+ print(b.groups)
for g in b.groups:
- if 'sam' in g.name.lower(): # go through loop, until 'sam' is found
+ if 'sam' in g.name.lower(): # go through loop, until 'sam' is found
break
rtag_data = g.tags[0] # rtag_data = tags within this group
@@ -42,22 +43,23 @@ def analyze_sams(filename):
spike_data.append(stim_tag.retrieve_data(idx, 'Spikes-1')[:])
dims = voltage_trace.dimensions[0].axis(len(voltage_trace))
+ os.chdir('/home/lisa/PycharmProjects/torus_ephys')
+ print(os.getcwd())
plt.plot(dims[:-1], voltage_trace[:-1])
for i in range(len(stim_pos)):
stim_y = [np.max(voltage_trace)+10, np.max(voltage_trace)+10]
plt.plot([stim_pos[i], stim_pos[i] + stim_extent[i]], stim_y, 'k')
- os.chdir('/home/lisa/Dropbox/Masterarbeit/')
+
for j in range(len(spike_data)):
for k in range(len(spike_data[j])):
plt.plot(spike_data[j][k], np.max(voltage_trace)+2.5, 'o', color='k')
plt.xlim([stim_pos[0]-.5, stim_pos[0] + stim_extent[-1] + .5])
plt.xlabel('time [s]')
plt.ylabel('voltage [mV]')
- plt.show()
print('saving...')
- plt.savefig(filename + stim_type + '.png')
- plt.close()
+ for s_i in range(len(b.groups)):
+ plt.savefig(filename + stim_type + str(s_i) + '.png')
# f.close()
# embed()
# exit()