LisaVial/torus_ephys
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still struggling

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Lisa 2019-07-01 15:20:00 +02:00
parent 62740c692a
commit 646eaccb9b
1 changed files with 13 additions and 11 deletions
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24
ephys_analysis.py
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@ -17,8 +17,8 @@ def analyze_sams(filename):
rtag_data.metadata.pprint(max_depth=-1)
print(40*'*')
stim_tag = g.multi_tags[0]
stim_pos = stim_tag.positions[:]
stim_extent = stim_tag.extents[:]
stim_pos = stim_tag.positions[:] # beginnings of stimulations
stim_extent = stim_tag.extents[:] # duration of stimulations
for r in rtag_data.references:
print(r.name, r.type)
@ -27,24 +27,26 @@ def analyze_sams(filename):
spike_data = []
for i in range(len(stim_pos)):
spike_data.append(stim_tag.retrieve_data(i, 'Spikes-1')[:])
for idx in range(len(stim_pos)):
spike_data.append(stim_tag.retrieve_data(idx, 'Spikes-1')[:])
dims = [[]] * len(voltage_trace)
for j in range(len(spike_data)):
dims[j] = voltage_trace.dimensions[j]
print(spike_data, len(spike_data))
# dims = [[]] * len(spike_data)
# for j in range(len(spike_data)):
# dims[j] = spike_data.dimensions[j]
# print(spike_data, len(spike_data))
# embed()
# exit()
f.close()
return stim_pos, stim_extent, spike_data, voltage_trace, dims
return stim_pos, stim_extent, spike_data, voltage_trace
if __name__ == '__main__':
data_dir = '/home/lisa/data'
data_set = '2019-06-24-aa-invivo-1'
stim_pos, stim_extent, spike_data, voltage_trace, dims = analyze_sams(os.path.join(data_dir, data_set, data_set + '.nix'))
stim_pos, stim_extent, spike_data, voltage_trace = analyze_sams(os.path.join(data_dir, data_set, data_set + '.nix'))
for i in range(len(stim_pos)):
plt.eventplot(dims[i], spike_data[i])
plt.scatter(voltage_trace.dimensions[i].axis(1000), spike_data[i][:1000])
plt.show()
# spikes = stim_tag.retrieve_data(i, 'Spikes-1')[:]
# print(spikes)