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add function to recalculate saved values

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a.ott 2020-08-01 12:04:10 +02:00
parent f973882e62
commit d8911da92f
1 changed files with 16 additions and 3 deletions
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19
cell_overview.py
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@ -1,19 +1,32 @@
from CellData import icelldata_of_dir from CellData import icelldata_of_dir, CellData
from Baseline import BaselineCellData from Baseline import BaselineCellData
from FiCurve import FICurveCellData from FiCurve import FICurveCellData
import os import os
import numpy as np
def main(): def main():
# plot_visualizations("cells/") # plot_visualizations("cells/")
# full_overview("cells/master_table.csv", "cells/") # full_overview("cells/master_table.csv", "cells/")
for cell_data in icelldata_of_dir("data/invivo_bursty/", test_for_v1_trace=False): recalculate_saved_preanalysis("data/test_data/")
def recalculate_saved_preanalysis(data_folder):
for cell_data in icelldata_of_dir(data_folder, test_for_v1_trace=True):
print(cell_data.get_data_path())
baseline = BaselineCellData(cell_data) baseline = BaselineCellData(cell_data)
baseline.save_values(cell_data.get_data_path()) baseline.save_values(cell_data.get_data_path())
contrasts = cell_data.get_fi_contrasts()
fi_curve = FICurveCellData(cell_data, contrasts)
if fi_curve.get_f_inf_slope() < 0:
contrasts = np.array(cell_data.get_fi_contrasts()) * -1
print(contrasts)
fi_curve = FICurveCellData(cell_data, contrasts, save_dir=cell_data.get_data_path(), recalculate=True)
# fi_curve.plot_fi_curve()
def move_rejected_cell_data(): def move_rejected_cell_data():