Alexander/P-unit_model
2
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

update

Browse Source
This commit is contained in:
a.ott 2020-07-09 14:00:57 +02:00
parent 7f8391ba4f
commit a176bede4c
6 changed files with 58 additions and 48 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

13
thesis/Masterthesis.aux
View File

@ -24,9 +24,12 @@
\@writefile{toc}{\contentsline {section}{\numberline {2}Introduction}{2}{section.2}} \@writefile{toc}{\contentsline {section}{\numberline {2}Introduction}{2}{section.2}}
\@writefile{toc}{\contentsline {section}{\numberline {3}Materials and Methods}{2}{section.3}} \@writefile{toc}{\contentsline {section}{\numberline {3}Materials and Methods}{2}{section.3}}
\@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Notes:}{2}{subsection.3.1}} \@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Notes:}{2}{subsection.3.1}}
\@writefile{toc}{\contentsline {section}{\numberline {4}Results}{3}{section.4}} \@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Henriettes structure:}{3}{subsection.3.2}}
\@writefile{toc}{\contentsline {section}{\numberline {5}Discussion}{3}{section.5}} \@writefile{toc}{\contentsline {section}{\numberline {4}Results}{4}{section.4}}
\@writefile{toc}{\contentsline {section}{\numberline {6}Possible Sources}{3}{section.6}} \@writefile{toc}{\contentsline {section}{\numberline {5}Discussion}{4}{section.5}}
\@writefile{toc}{\contentsline {subsection}{\numberline {6.1}Henriette Walz - Thesis}{3}{subsection.6.1}} \@writefile{toc}{\contentsline {section}{\numberline {6}Possible Sources}{4}{section.6}}
\@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.1}Nervous system - Signal encoding}{3}{subsubsection.6.1.1}} \@writefile{toc}{\contentsline {subsection}{\numberline {6.1}Henriette Walz - Thesis}{4}{subsection.6.1}}
\@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.1}Nervous system - Signal encoding}{4}{subsubsection.6.1.1}}
\@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.2}electrosensory system - electric fish}{5}{subsubsection.6.1.2}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.2}electrosensory system - electric fish}{5}{subsubsection.6.1.2}}
\@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.3}P-Units encoding}{6}{subsubsection.6.1.3}}
\@writefile{toc}{\contentsline {subsubsection}{\numberline {6.1.4}Chapter 4 - other models}{6}{subsubsection.6.1.4}}

38
thesis/Masterthesis.log
View File

@ -1,4 +1,4 @@
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex 2018.11.12) 5 JUL 2020 12:01 This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex 2018.11.12) 6 JUL 2020 16:24
entering extended mode entering extended mode
restricted \write18 enabled. restricted \write18 enabled.
%&-line parsing enabled. %&-line parsing enabled.
@ -502,39 +502,39 @@ l.69 \newpage
[2] [3] [2] [3]
(/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-32.def (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-32.def
File: uni-32.def 2013/05/13 UCS: Unicode data U+2000..U+20FF File: uni-32.def 2013/05/13 UCS: Unicode data U+2000..U+20FF
) [4] ) [4] [5]
(/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-34.def (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-34.def
File: uni-34.def 2013/05/13 UCS: Unicode data U+2200..U+22FF File: uni-34.def 2013/05/13 UCS: Unicode data U+2200..U+22FF
) ) [6]
Package atveryend Info: Empty hook `BeforeClearDocument' on input line 264. Package atveryend Info: Empty hook `BeforeClearDocument' on input line 316.
[5] [7]
Package atveryend Info: Empty hook `AfterLastShipout' on input line 264. Package atveryend Info: Empty hook `AfterLastShipout' on input line 316.
(./Masterthesis.aux) (./Masterthesis.aux)
Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 264. Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 316.
Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 264. Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 316.
Package rerunfilecheck Info: File `Masterthesis.out' has not changed. Package rerunfilecheck Info: File `Masterthesis.out' has not changed.
(rerunfilecheck) Checksum: 899A2D781B0140E88221C97161A12968;589. (rerunfilecheck) Checksum: 0B9FD88A560E631C1F998F25D3006481;817.
Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 264. Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 316.
) )
Here is how much of TeX's memory you used: Here is how much of TeX's memory you used:
10988 strings out of 493029 11015 strings out of 493029
155721 string characters out of 6136233 155976 string characters out of 6136233
259481 words of memory out of 5000000 259481 words of memory out of 5000000
14339 multiletter control sequences out of 15000+600000 14342 multiletter control sequences out of 15000+600000
8867 words of font info for 32 fonts, out of 8000000 for 9000 8867 words of font info for 32 fonts, out of 8000000 for 9000
1141 hyphenation exceptions out of 8191 1141 hyphenation exceptions out of 8191
37i,11n,38p,339b,561s stack positions out of 5000i,500n,10000p,200000b,80000s 37i,11n,38p,417b,561s stack positions out of 5000i,500n,10000p,200000b,80000s
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></us </usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/share/texliv /texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf- e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy8.pfb> onts/type1/public/amsfonts/cm/cmsy8.pfb>
Output written on Masterthesis.pdf (6 pages, 82308 bytes). Output written on Masterthesis.pdf (8 pages, 86985 bytes).
PDF statistics: PDF statistics:
182 PDF objects out of 1000 (max. 8388607) 231 PDF objects out of 1000 (max. 8388607)
166 compressed objects within 2 object streams 212 compressed objects within 3 object streams
74 named destinations out of 1000 (max. 500000) 98 named destinations out of 1000 (max. 500000)
81 words of extra memory for PDF output out of 10000 (max. 10000000) 105 words of extra memory for PDF output out of 10000 (max. 10000000)

15
thesis/Masterthesis.out
View File

@ -2,9 +2,12 @@
\BOOKMARK [1][]{section.2}{Introduction}{}% 2 \BOOKMARK [1][]{section.2}{Introduction}{}% 2
\BOOKMARK [1][]{section.3}{Materials and Methods}{}% 3 \BOOKMARK [1][]{section.3}{Materials and Methods}{}% 3
\BOOKMARK [2][]{subsection.3.1}{Notes:}{section.3}% 4 \BOOKMARK [2][]{subsection.3.1}{Notes:}{section.3}% 4
\BOOKMARK [1][]{section.4}{Results}{}% 5 \BOOKMARK [2][]{subsection.3.2}{Henriettes structure:}{section.3}% 5
\BOOKMARK [1][]{section.5}{Discussion}{}% 6 \BOOKMARK [1][]{section.4}{Results}{}% 6
\BOOKMARK [1][]{section.6}{Possible Sources}{}% 7 \BOOKMARK [1][]{section.5}{Discussion}{}% 7
\BOOKMARK [2][]{subsection.6.1}{Henriette Walz - Thesis}{section.6}% 8 \BOOKMARK [1][]{section.6}{Possible Sources}{}% 8
\BOOKMARK [3][]{subsubsection.6.1.1}{Nervous system - Signal encoding}{subsection.6.1}% 9 \BOOKMARK [2][]{subsection.6.1}{Henriette Walz - Thesis}{section.6}% 9
\BOOKMARK [3][]{subsubsection.6.1.2}{electrosensory system - electric fish}{subsection.6.1}% 10 \BOOKMARK [3][]{subsubsection.6.1.1}{Nervous system - Signal encoding}{subsection.6.1}% 10
\BOOKMARK [3][]{subsubsection.6.1.2}{electrosensory system - electric fish}{subsection.6.1}% 11
\BOOKMARK [3][]{subsubsection.6.1.3}{P-Units encoding}{subsection.6.1}% 12
\BOOKMARK [3][]{subsubsection.6.1.4}{Chapter 4 - other models}{subsection.6.1}% 13

BIN
thesis/Masterthesis.synctex.gz
View File

Binary file not shown.

27
thesis/Masterthesis.tex
View File

@ -123,30 +123,31 @@ Außerdem erkläre ich, dass die eingereichte Arbeit weder vollständig noch in
\subsection{Notes:} \subsection{Notes:}
\begin{enumerate}
\item Construction of model
\begin{enumerate} \begin{enumerate}
\item Explain general LIF
\item parameters explanation, dif. equations
\item Explain addition of adaption current
\item note addition of noise
\item check between alpha in fire-rate model adaption and a-delta in LIFAC
\item check for noise independence from step-size (?)
\end{enumerate}
\item Data generation \item Data generation
\begin{enumerate} \begin{enumerate}
\item How data was measured / which data used \item How data was measured / which data used
\item How data was chosen -> at least 30s baseline, 7 contrasts with 7 trials \item How data was chosen -> at least 30s baseline, 7 contrasts with 7 trials
\item experimental protocells were allowed by XYZ (before 2012: All experimental protocols were approved and complied with national and regional laws (file no. 55.2-1-54-2531-135-09). between 2013-2016 ZP 1/13 Regierungspräsidium Tübingen and after 2016 ZP 1/16 Regierungspräsidium Tübingen) \item experimental protocells were allowed by XYZ (before 2012: All experimental protocols were approved and complied with national and regional laws (file no. 55.2-1-54-2531-135-09). between 2013-2016 ZP 1/13 Regierungspräsidium Tübingen and after 2016 ZP 1/16 Regierungspräsidium Tübingen)
\item description of data -> Baseline properties, FI-Curve with images made from cells
\end{enumerate} \end{enumerate}
\item behavior parameters: \item behavior parameters:
\begin{enumerate} \begin{enumerate}
\item which behaviors were looked at / calculated and why (bf, vs, sc, cv, fi-curve...) \item which behaviors were looked at / calculated and why (bf, vs, sc, cv, fi-curve...)
\item how exactly were they calculated in the cell and model \item how exactly were they calculated in the cell and model
\end{enumerate} \item stimulus protocols
\end{enumerate}
\item Construction of model
\begin{enumerate}
\item Explain general LIF
\item parameters explanation, dif. equations
\item Explain addition of adaption current
\item note addition of noise + factor for the independence from step size
\item check between alpha in fire-rate model adaption and a-delta in LIFAC
\end{enumerate}
\item Fitting of model to data \item Fitting of model to data
\begin{enumerate} \begin{enumerate}

13
thesis/Masterthesis.toc
View File

@ -3,9 +3,12 @@
\contentsline {section}{\numberline {2}Introduction}{2}{section.2} \contentsline {section}{\numberline {2}Introduction}{2}{section.2}
\contentsline {section}{\numberline {3}Materials and Methods}{2}{section.3} \contentsline {section}{\numberline {3}Materials and Methods}{2}{section.3}
\contentsline {subsection}{\numberline {3.1}Notes:}{2}{subsection.3.1} \contentsline {subsection}{\numberline {3.1}Notes:}{2}{subsection.3.1}
\contentsline {section}{\numberline {4}Results}{3}{section.4} \contentsline {subsection}{\numberline {3.2}Henriettes structure:}{3}{subsection.3.2}
\contentsline {section}{\numberline {5}Discussion}{3}{section.5} \contentsline {section}{\numberline {4}Results}{4}{section.4}
\contentsline {section}{\numberline {6}Possible Sources}{3}{section.6} \contentsline {section}{\numberline {5}Discussion}{4}{section.5}
\contentsline {subsection}{\numberline {6.1}Henriette Walz - Thesis}{3}{subsection.6.1} \contentsline {section}{\numberline {6}Possible Sources}{4}{section.6}
\contentsline {subsubsection}{\numberline {6.1.1}Nervous system - Signal encoding}{3}{subsubsection.6.1.1} \contentsline {subsection}{\numberline {6.1}Henriette Walz - Thesis}{4}{subsection.6.1}
\contentsline {subsubsection}{\numberline {6.1.1}Nervous system - Signal encoding}{4}{subsubsection.6.1.1}
\contentsline {subsubsection}{\numberline {6.1.2}electrosensory system - electric fish}{5}{subsubsection.6.1.2} \contentsline {subsubsection}{\numberline {6.1.2}electrosensory system - electric fish}{5}{subsubsection.6.1.2}
\contentsline {subsubsection}{\numberline {6.1.3}P-Units encoding}{6}{subsubsection.6.1.3}
\contentsline {subsubsection}{\numberline {6.1.4}Chapter 4 - other models}{6}{subsubsection.6.1.4}