diff --git a/test.py b/test.py index b1f1503..d72bbe7 100644 --- a/test.py +++ b/test.py @@ -1,68 +1,25 @@ from Baseline import get_baseline_class -from CellData import CellData +from CellData import CellData, icelldata_of_dir from models.LIFACnoise import LifacNoiseModel from Baseline import BaselineCellData, BaselineModel from os import listdir +import numpy as np from IPython import embed import pyrelacs.DataLoader as Dl from ModelFit import ModelFit - - - -fit = ModelFit("results/invivo_results/start_parameter_7_err_6.87/") - -print(fit.comparable_error()) -fit.generate_master_plot() - - - -quit() - - - -def icelldata_of_dir(base_path): - global COUNT - for item in sorted(listdir(base_path)): - item_path = base_path + item - - try: - data = CellData(item_path) - - yield data - - except TypeError as e: - print(str(e)) - - except IndexError as e: - print(str(e), "\n") - - except ValueError as e: - print(str(e), "\n") - - print("Currently throw errors: {}".format(COUNT)) - - -for data in icelldata_of_dir("invivo_data/"): - v1 = data.get_base_traces(data.V1) - - if len(v1) == 0: - embed() - quit() - - -quit() - -parameter_bursty_model = {'step_size': 5e-05, 'mem_tau': 0.0066693150193490695, 'v_base': 0, 'v_zero': 0, - 'threshold': 1, 'v_offset': -45.703125, 'input_scaling': 172.13861987237314, - 'delta_a': 0.06148215166012024, 'tau_a': 0.03391674075000068, 'a_zero': 2, - 'noise_strength': 0.0684136549210377, 'dend_tau': 0.0013694103932013805, - 'refractory_period': 0.001} -eod = 752 -model = LifacNoiseModel(parameter_bursty_model) -baseline_model = get_baseline_class(model, 752, trials=2) -baseline_model.get_burstiness() - +from FiCurve import FICurveModel +import os +import matplotlib.pyplot as plt +vs = [] +for cell in icelldata_of_dir("invivo_data/"): + base = BaselineCellData(cell) + + vs.append(base.get_burstiness()) + +bins = np.arange(0, 1.05, 0.05) +plt.hist(vs, bins=bins) +plt.show() quit()