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add plottools option of labeling figures update colors

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a.ott 2020-09-08 18:26:24 +02:00
parent aacdac9aad
commit 69de5ecf59
1 changed files with 24 additions and 24 deletions
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Figure_constants.py
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@ -1,33 +1,33 @@
import plottools.colors as ptc
from plottools.axes import labelaxes_params
SAVE_FOLDER = "./thesis/figures/"
# 2013-04-17-ae-invivo-1
eod_1 = 601
model_cell_1 = {'v_zero': 0, 'tau_a': 0.10594195682772084, 'a_zero': 20.297158690978996, 'v_base': 0, 'step_size': 5e-05,
'input_scaling': 199.04341472682282, 'mem_tau': 0.0013351097297217276, 'dend_tau': 0.005031489230091817,
'threshold': 1, 'noise_strength': 0.020762013938241387, 'delta_a': 0.19269473149955363,
'refractory_period': 0.002371738343145318, 'v_offset': -43.75}
# 2013-01-08-ab-invivo-1
eod_2 = 800
model_cell_2 = {'v_offset': -48.828125, 'mem_tau': 0.0021479243799079964, 'threshold': 1, 'a_zero': 27.680206509021417,
'step_size': 5e-05, 'v_zero': 0, 'delta_a': 0.12873961597602196, 'input_scaling': 242.8680596636849,
'tau_a': 0.10796132718941187, 'v_base': 0, 'refractory_period': 0.0007639751586561779,
'dend_tau': 0.005438366305916608, 'noise_strength': 0.02022218133038218}
# 2012-06-27-ah-invivo-1
eod_3 = 752 # Hz
model_cell_3 = {'v_base': 0, 'noise_strength': 0.05081267319483283, 'threshold': 1, 'a_zero': 27.063463123260032,
'tau_a': 0.08095824056298784, 'step_size': 5e-05, 'delta_a': 0.2030821656947388,
'mem_tau': 0.0030522466803712903, 'v_zero': 0, 'v_offset': -160.9375, 'refractory_period': 0.0012932884089886,
'input_scaling': 591.8852909105865, 'dend_tau': 0.005488247178541381}
FIG_SIZE_SMALL = (4, 4)
FIG_SIZE_MEDIUM = (6, 6)
FIG_SIZE_LARGE = (8, 8)
FIG_SIZE_SMALL_WIDE = (6, 4)
FIG_SIZE_MEDIUM_WIDE = (8, 5)
""" Muted colors. """
# from git bendalab/plottools
colors_muted = ptc.colors_muted
COLOR_DATA = ptc.colors_vivid["blue"]
COLOR_DATA_f0 = ptc.colors_vivid["red"]
COLOR_DATA_finf = ptc.colors_vivid["green"]
COLOR_MODEL = colors_muted["orange"]
COLOR_MODEL_f0 = colors_muted["red"]
COLOR_MODEL_finf = colors_muted["green"]
f0_marker = (3, 0, 0) # "^"
finf_marker = (4, 0, 0) # "s"
COLOR_MODEL = "orange"
COLOR_DATA = "blue"
def set_figure_labels(xoffset="auto", yoffset='auto'):
labelaxes_params(xoffs=xoffset, yoffs=yoffset, labels='A',
font=dict(size=16, family='serif'))