Alexander/P-unit_model
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This commit is contained in:
a.ott
2020-08-15 17:16:39 +02:00
parent f176a7db4f
commit 45aa212b8a
42 changed files with 691 additions and 83 deletions
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2
tests/ModelTests.py
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@@ -59,7 +59,7 @@ def test_lifac_noise():
time = np.arange(0, total_time, step_size)
stimulus = SinusoidalStepStimulus(700, 0.2, start, duration)
model.simulate_fast(stimulus, total_time)
model.simulate(stimulus, total_time)
fig, axes = plt.subplots(nrows=4, sharex="col")
sparse_time = np.arange(0, total_time, 1/5000)

6
tests/generalTests.py
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@@ -88,7 +88,7 @@ def test_simulation_speed():
t_start = time.time()
for i in range(repetitions):
v, spikes = model.simulate_fast(stimulus, seconds, time_start)
v, spikes = model.simulate(stimulus, seconds, time_start)
print(len(v))
print(len(spikes))
@@ -195,7 +195,7 @@ def test_vector_strength_calculation():
bf, vs1, sc = model.calculate_baseline_markers(600)
base_stim = SinusAmplitudeModulationStimulus(600, 0, 0)
_, spiketimes = model.simulate_fast(base_stim, 30)
_, spiketimes = model.simulate(base_stim, 30)
stimulus_trace = base_stim.as_array(0, 30, model.get_sampling_interval())
time_trace = np.arange(0, 30, model.get_sampling_interval())
@@ -227,7 +227,7 @@ def test_baseline_polar_plot():
def plot_model_during_stimulus(model: LifacNoiseModel, stimulus:SinusAmplitudeModulationStimulus, total_time):
_, spiketimes = model.simulate_fast(stimulus, total_time)
_, spiketimes = model.simulate(stimulus, total_time)
time = np.arange(0, total_time, model.get_sampling_interval())
fig, axes = plt.subplots(5, 1, figsize=(9, 4*2), sharex="all")