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make eod calculation more lightweight, save/load results to a file

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This commit is contained in:
a.ott 2020-07-07 11:29:35 +02:00
parent dbd28a7bd3
commit 3faabb353b
1 changed files with 16 additions and 9 deletions
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25
CellData.py
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@ -264,15 +264,22 @@ class CellData:
self.recording_times = self.parser.get_recording_times()
return self.recording_times[3]
def get_eod_frequency(self):
eods = self.get_base_traces(self.EOD)
sampling_interval = self.get_sampling_interval()
frequencies = []
for eod in eods:
time = np.arange(0, len(eod) * sampling_interval, sampling_interval)
frequencies.append(hf.calculate_eod_frequency(time, eod))
return np.mean(frequencies)
def get_eod_frequency(self, recalculate=False):
eod_freq_file_name = "eod_freq_peak_based.npy"
eod_freq_file_path = os.path.join(self.get_data_path(), eod_freq_file_name)
if os.path.exists(eod_freq_file_path) and not recalculate:
print("Loaded eod_freq from file")
return np.load(eod_freq_file_path)
else:
eods = self.get_base_traces(self.EOD)
sampling_interval = self.get_sampling_interval()
frequencies = []
for eod in eods:
frequencies.append(hf.calculate_eod_frequency(eod, sampling_interval))
mean_freq = np.mean(frequencies)
np.save(eod_freq_file_path, mean_freq)
print("Saved eod freq to file.")
return mean_freq
def __read_fi_spiketimes_info__(self):
if self.fi_spiketimes is None: