base support and visuals for repros

spike_redetection/DataProvider.py

@@ -1,20 +0,0 @@
-
-from parser.CellData import CellData
-from parser.DataParserFactory import DatParser
-
-class DataProvider:
-
-    def __init__(self, data_path):
-        self.data_path = data_path
-        # self.cell = CellData(data_path)
-        self.parser = DatParser(data_path)
-
-    def get_repros(self):
-        pass
-
-    def get_stim_values(self, repro):
-        pass
-
-    def get_trials(self, repro, stimulus_value):
-        pass
-

spike_redetection/SpikeRedetectGui.py

@@ -1,97 +0,0 @@
-
-from PyQt5.QtWidgets import QWidget, QPushButton, QSizePolicy, QLineEdit,\
-    QMessageBox, QVBoxLayout, QHBoxLayout, QGridLayout, QLabel, QFrame,\
-    QDoubleSpinBox
-from PyQt5.QtCore import pyqtSlot
-
-import numpy as np
-from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
-from matplotlib.figure import Figure
-
-
-class SpikeRedetectGui(QWidget):
-
-    def __init__(self, data_provider):
-        super().__init__()
-        self.data_provider = data_provider
-        self.title = 'Spike Redetection'
-        self.left = 10
-        self.top = 10
-        self.width = 640
-        self.height = 400
-        self.initUI()
-
-    def initUI(self):
-        self.setWindowTitle(self.title)
-        self.setGeometry(self.left, self.top, self.width, self.height)
-
-        # Middle:
-        middle = QHBoxLayout()
-
-        # Canvas for matplotlib figure
-        m = PlotCanvas(self, width=5, height=4)
-        m.move(0, 0)
-        middle.addWidget(m)
-        middle.addWidget(QVLine())
-
-        # Side (options) panel
-        panel = QFrame()
-        panel_layout = QVBoxLayout()
-        button = QPushButton('Button!', self)
-        button.setToolTip('A nice button!')
-        button.clicked.connect(m.plot)
-        panel_layout.addWidget(button)
-
-        threshold_label = QLabel("Threshold:")
-        panel_layout.addWidget(threshold_label)
-        threshold_spinbox = QDoubleSpinBox(self)
-        threshold_spinbox.setValue(2)
-        threshold_spinbox.setSingleStep(0.5)
-        threshold_spinbox.valueChanged.connect(lambda: m.plot(threshold_spinbox.value()))
-        panel_layout.addWidget(threshold_spinbox)
-
-        panel.setLayout(panel_layout)
-        middle.addWidget(panel)
-
-        self.setLayout(middle)
-        self.show()
-
-
-class PlotCanvas(FigureCanvas):
-
-    def __init__(self, parent=None, width=5, height=4, dpi=100):
-        fig = Figure(figsize=(width, height), dpi=dpi)
-        self.axes = fig.add_subplot(111)
-
-        FigureCanvas.__init__(self, fig)
-        self.setParent(parent)
-
-        FigureCanvas.setSizePolicy(self,
-                                   QSizePolicy.Expanding,
-                                   QSizePolicy.Expanding)
-        FigureCanvas.updateGeometry(self)
-        self.plot()
-
-    @pyqtSlot()
-    def plot(self, mean=1):
-        x = np.arange(0, 1, 0.0001)
-        data = np.sin(x*np.pi*2*mean)
-        ax = self.axes
-        ax.clear()
-        ax.plot(data, 'r-')
-        ax.set_title('Sinus Example')
-        self.draw()
-
-
-class QHLine(QFrame):
-    def __init__(self):
-        super(QHLine, self).__init__()
-        self.setFrameShape(QFrame.HLine)
-        self.setFrameShadow(QFrame.Sunken)
-
-
-class QVLine(QFrame):
-    def __init__(self):
-        super(QVLine, self).__init__()
-        self.setFrameShape(QFrame.VLine)
-        self.setFrameShadow(QFrame.Sunken)

spike_redetection/main.py

@@ -1,17 +0,0 @@
-
-import sys
-from PyQt5.QtWidgets import QApplication, QWidget, QPushButton
-
-from spike_redetection.DataProvider import DataProvider
-from spike_redetection.SpikeRedetectGui import SpikeRedetectGui
-
-
-def main():
-    app = QApplication(sys.argv)
-    data_provider = DataProvider("../data/final_sam/2010-11-08-al-invivo-1")
-    ex = SpikeRedetectGui(data_provider)
-    sys.exit(app.exec_())
-
-
-if __name__ == '__main__':
-    main()